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The map label for this gene is yjgD

Identifier: 15672920

GI number: 15672920

Start: 963377

End: 964264

Strand: Direct

Name: yjgD

Synonym: L163056

Alternate gene names: 15672920

Gene position: 963377-964264 (Clockwise)

Preceding gene: 15672919

Following gene: 15672921

Centisome position: 40.72

GC content: 35.36

Gene sequence:

>888_bases
ATGAAAAAAAATAAAAAAATAATTCTTGGGATTGTCTTGCTTTTGGCTTTAATTATCTTGCCAGCTCTTCCCTTTCTCTT
AATCAAAGGTCAGTATAATTTTCATGACTTTTGGACCATGTTTTTCACAAAGATTTTTAGTTGGTCAGCATTTGTAGATG
CCTTTTTACCAATTATAAAAATGATTCCGTCGTCTCTTGAAATGACAATAATTGCCATGGTCTTTGGGTTACTTTTAGGA
CTCATTCTTGCTTTGGTTCGTATTAATAAAATTCCAATTTTGAATCAATTGCGTGCTTTGTTTGTTAGTTTCATTCGTGG
AACCCCTATTTTGGTACAATTATACCTTTCATATACGGGGATTCCGTTGATTTTAAAAGCAATCAATATGAATTATGGAA
CGAATTTTAATGTGAATACAATTCCAGCTATGCTTTTTGTCATTGTTGCTTTCGCACTCAATGAAGGAGCTTATAACTCG
GAAACAATTCGTGCTGCAATTCAATCCGTTGATAAAGGACAAATCGAAGCAGCCAAATCACTCGGAATGACAAACTTCCA
AGTTTTTATGCGTGTGACTTTACCTGAAGCAGCAACCGTTGCAACGGCTCCTTTAGGAAACGCTCTGATTGGACTTTTGA
AATCAACTTCACTTGCCTTCGTTGCAGGTGTGGTAGAAATGACAGCTCGTGCTCAAATTATTGGGGGCTCAACCTTCCGT
TTATTTGAAACTTATTTAGCCTTAGCTTTAGTTTACTGGCCAATTTGTATTATTTTTGAACTCTTAATTCGTGGATTAGA
GCGTAAATTAGACGTAAGAATGCCAAATGATAAACGTAAAAATCGTGCACAAATTTCATTGAGCAAAAATCCATTTAACC
AAGCCTAA

Upstream 100 bases:

>100_bases
TAAGTAAATGTAAAAATATTAAATAATAAGTTCAATAAATCCGAATAAACTCTGTCACTTTTTTACTGACAGAGTTTTCC
CTATTAGAAAAATAAAAAAT

Downstream 100 bases:

>100_bases
GGAGGACGATAATGATTAAAATTACAAATATAAGTAAAACATTTTCGGGTAATCAAGTTCTCAATGACATTAGCTTGGAA
ATTGAAGAAGGAGATGTTGT

Product: amino acid ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MKKNKKIILGIVLLLALIILPALPFLLIKGQYNFHDFWTMFFTKIFSWSAFVDAFLPIIKMIPSSLEMTIIAMVFGLLLG
LILALVRINKIPILNQLRALFVSFIRGTPILVQLYLSYTGIPLILKAINMNYGTNFNVNTIPAMLFVIVAFALNEGAYNS
ETIRAAIQSVDKGQIEAAKSLGMTNFQVFMRVTLPEAATVATAPLGNALIGLLKSTSLAFVAGVVEMTARAQIIGGSTFR
LFETYLALALVYWPICIIFELLIRGLERKLDVRMPNDKRKNRAQISLSKNPFNQA

Sequences:

>Translated_295_residues
MKKNKKIILGIVLLLALIILPALPFLLIKGQYNFHDFWTMFFTKIFSWSAFVDAFLPIIKMIPSSLEMTIIAMVFGLLLG
LILALVRINKIPILNQLRALFVSFIRGTPILVQLYLSYTGIPLILKAINMNYGTNFNVNTIPAMLFVIVAFALNEGAYNS
ETIRAAIQSVDKGQIEAAKSLGMTNFQVFMRVTLPEAATVATAPLGNALIGLLKSTSLAFVAGVVEMTARAQIIGGSTFR
LFETYLALALVYWPICIIFELLIRGLERKLDVRMPNDKRKNRAQISLSKNPFNQA
>Mature_295_residues
MKKNKKIILGIVLLLALIILPALPFLLIKGQYNFHDFWTMFFTKIFSWSAFVDAFLPIIKMIPSSLEMTIIAMVFGLLLG
LILALVRINKIPILNQLRALFVSFIRGTPILVQLYLSYTGIPLILKAINMNYGTNFNVNTIPAMLFVIVAFALNEGAYNS
ETIRAAIQSVDKGQIEAAKSLGMTNFQVFMRVTLPEAATVATAPLGNALIGLLKSTSLAFVAGVVEMTARAQIIGGSTFR
LFETYLALALVYWPICIIFELLIRGLERKLDVRMPNDKRKNRAQISLSKNPFNQA

Specific function: Probably part of the ABC transporter complex yxeMNO that could be involved in amino-acid import. May transport S- methylcysteine. Probably responsible for the translocation of the substrate across the membrane (Probable) [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=227, Percent_Identity=38.7665198237885, Blast_Score=151, Evalue=4e-38,
Organism=Escherichia coli, GI1787030, Length=227, Percent_Identity=32.5991189427313, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1788645, Length=206, Percent_Identity=31.5533980582524, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1786873, Length=224, Percent_Identity=30.8035714285714, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI87082239, Length=205, Percent_Identity=31.219512195122, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1786874, Length=214, Percent_Identity=29.9065420560748, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1787086, Length=216, Percent_Identity=27.7777777777778, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1788646, Length=212, Percent_Identity=30.188679245283, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787087, Length=241, Percent_Identity=24.896265560166, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI48994930, Length=237, Percent_Identity=29.957805907173, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32820; Mature: 32820

Theoretical pI: Translated: 10.63; Mature: 10.63

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNKKIILGIVLLLALIILPALPFLLIKGQYNFHDFWTMFFTKIFSWSAFVDAFLPIIK
CCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MIPSSLEMTIIAMVFGLLLGLILALVRINKIPILNQLRALFVSFIRGTPILVQLYLSYTG
HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC
IPLILKAINMNYGTNFNVNTIPAMLFVIVAFALNEGAYNSETIRAAIQSVDKGQIEAAKS
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHH
LGMTNFQVFMRVTLPEAATVATAPLGNALIGLLKSTSLAFVAGVVEMTARAQIIGGSTFR
CCCCHHHHEEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LFETYLALALVYWPICIIFELLIRGLERKLDVRMPNDKRKNRAQISLSKNPFNQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCC
>Mature Secondary Structure
MKKNKKIILGIVLLLALIILPALPFLLIKGQYNFHDFWTMFFTKIFSWSAFVDAFLPIIK
CCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MIPSSLEMTIIAMVFGLLLGLILALVRINKIPILNQLRALFVSFIRGTPILVQLYLSYTG
HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC
IPLILKAINMNYGTNFNVNTIPAMLFVIVAFALNEGAYNSETIRAAIQSVDKGQIEAAKS
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHH
LGMTNFQVFMRVTLPEAATVATAPLGNALIGLLKSTSLAFVAGVVEMTARAQIIGGSTFR
CCCCHHHHEEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LFETYLALALVYWPICIIFELLIRGLERKLDVRMPNDKRKNRAQISLSKNPFNQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8867804; 9384377 [H]