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The map label for this gene is yjdA

Identifier: 15672888

GI number: 15672888

Start: 930397

End: 931134

Strand: Direct

Name: yjdA

Synonym: L130150

Alternate gene names: 15672888

Gene position: 930397-931134 (Clockwise)

Preceding gene: 15672887

Following gene: 15672889

Centisome position: 39.33

GC content: 32.66

Gene sequence:

>738_bases
ATGAAACAAAATAAATATGATAATGAACGTTTTTTCAAAAATTATGCATCGATGTCAAGGTCCCAAAAGGGATTGAAGGC
CGCTGGTGAATGGTCTGAATTAGAAAAACTACTCCCAAATTTTCAGGATAAAAAAGTTTTGGATTTAGGGTGTGGATATG
GATGGCACTGTAAATATGTAGTCAATCATGGAGCTAAAGAAGTAGTAGGAATAGATCTTTCACACAAGATGCTTGAAGTT
GCTCTTGATATTAATAATGATAAAAAAATTACCTATCAACAATCTGCAATAGAGGATATTAACTTTCCTGCAGATACTTT
TGATGTTGTGTTTAGTTCATTAGCTTTTCACTACATTTCAAATTTTGAAGACCTGGTCTGCAAAATTTCAAAGTGGCTTA
AAAAGAATGGTGAATTTATTTTCTCTGTTGAACATCCTCTCTATACCTCATCAGGGAAACAGGATTGGTGCTATGATGCA
GAGGGTAAAATTCTTCATTTTCCGGTTGATAATTATTATTATGAAGGAAAACGTGAAGTCAATTTCTTAGGTGAGCCAAT
TATTAAGTATCATCGGACATTAACAGGCTATATAAATTCTTTGTTAAGTTCTGGTTTTGAACTTACTAATTTAATTGAAC
CCAAACCTCCTATAGAAATGAGAGAGCTTGAAGAAATGAAAAATGAGATGAGACGTCCAATGATGTTGCTTATTTCTGCA
AGAAATAAAAAATCATAG

Upstream 100 bases:

>100_bases
GAAAGAAGATAGATGAACAAAGGAATTATTGCTCAAAAAATTGTAGTTTCCATGTAAATATTTATAAAATGATGAACTAT
ATTTACATGGAGAATGAAAA

Downstream 100 bases:

>100_bases
TCATAAAGTAACTATAATAAGAGTTCCTATTCGAATAAAGTATGGGACTCTTATTTTTTATTTAGTTCGTTTAATGATAT
TAGTAGTTTTTTAATTACTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MKQNKYDNERFFKNYASMSRSQKGLKAAGEWSELEKLLPNFQDKKVLDLGCGYGWHCKYVVNHGAKEVVGIDLSHKMLEV
ALDINNDKKITYQQSAIEDINFPADTFDVVFSSLAFHYISNFEDLVCKISKWLKKNGEFIFSVEHPLYTSSGKQDWCYDA
EGKILHFPVDNYYYEGKREVNFLGEPIIKYHRTLTGYINSLLSSGFELTNLIEPKPPIEMRELEEMKNEMRRPMMLLISA
RNKKS

Sequences:

>Translated_245_residues
MKQNKYDNERFFKNYASMSRSQKGLKAAGEWSELEKLLPNFQDKKVLDLGCGYGWHCKYVVNHGAKEVVGIDLSHKMLEV
ALDINNDKKITYQQSAIEDINFPADTFDVVFSSLAFHYISNFEDLVCKISKWLKKNGEFIFSVEHPLYTSSGKQDWCYDA
EGKILHFPVDNYYYEGKREVNFLGEPIIKYHRTLTGYINSLLSSGFELTNLIEPKPPIEMRELEEMKNEMRRPMMLLISA
RNKKS
>Mature_245_residues
MKQNKYDNERFFKNYASMSRSQKGLKAAGEWSELEKLLPNFQDKKVLDLGCGYGWHCKYVVNHGAKEVVGIDLSHKMLEV
ALDINNDKKITYQQSAIEDINFPADTFDVVFSSLAFHYISNFEDLVCKISKWLKKNGEFIFSVEHPLYTSSGKQDWCYDA
EGKILHFPVDNYYYEGKREVNFLGEPIIKYHRTLTGYINSLLSSGFELTNLIEPKPPIEMRELEEMKNEMRRPMMLLISA
RNKKS

Specific function: Bioc Is Involved In An Early, But Chemically Unexplored, Step In The Conversion Of Pimelic Acid To Biotin. [C]

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013216 [H]

Pfam domain/function: PF08241 Methyltransf_11 [H]

EC number: NA

Molecular weight: Translated: 28523; Mature: 28523

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQNKYDNERFFKNYASMSRSQKGLKAAGEWSELEKLLPNFQDKKVLDLGCGYGWHCKYV
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEEECCCCCCEEHHE
VNHGAKEVVGIDLSHKMLEVALDINNDKKITYQQSAIEDINFPADTFDVVFSSLAFHYIS
ECCCCHHEEECCHHHHHHHHEEECCCCCEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHH
NFEDLVCKISKWLKKNGEFIFSVEHPLYTSSGKQDWCYDAEGKILHFPVDNYYYEGKREV
HHHHHHHHHHHHHHCCCCEEEEECCCEECCCCCCCCEECCCCCEEEEECCCEEECCCCCC
NFLGEPIIKYHRTLTGYINSLLSSGFELTNLIEPKPPIEMRELEEMKNEMRRPMMLLISA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC
RNKKS
CCCCC
>Mature Secondary Structure
MKQNKYDNERFFKNYASMSRSQKGLKAAGEWSELEKLLPNFQDKKVLDLGCGYGWHCKYV
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEEECCCCCCEEHHE
VNHGAKEVVGIDLSHKMLEVALDINNDKKITYQQSAIEDINFPADTFDVVFSSLAFHYIS
ECCCCHHEEECCHHHHHHHHEEECCCCCEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHH
NFEDLVCKISKWLKKNGEFIFSVEHPLYTSSGKQDWCYDAEGKILHFPVDNYYYEGKREV
HHHHHHHHHHHHHHCCCCEEEEECCCEECCCCCCCCEECCCCCEEEEECCCEEECCCCCC
NFLGEPIIKYHRTLTGYINSLLSSGFELTNLIEPKPPIEMRELEEMKNEMRRPMMLLISA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC
RNKKS
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]