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The map label for this gene is yiiB

Identifier: 15672840

GI number: 15672840

Start: 881773

End: 882504

Strand: Direct

Name: yiiB

Synonym: L81441

Alternate gene names: 15672840

Gene position: 881773-882504 (Clockwise)

Preceding gene: 15672839

Following gene: 15672841

Centisome position: 37.27

GC content: 35.52

Gene sequence:

>732_bases
ATGGCTGGTCTAGTTGTTGATAGTAAATCAGGAGAGCGTTACGATAAACCTGGTCAGAAAATTGATGATGGAACAGAACT
TCGTCTTAAAGGTGAAAAGTTAAGATATGTTAGTCGAGGAGGGTTAAAATTAGAAAAGGCTCTTAAAGAATTTCATTTAG
AAATTAATGGAAAAACTTGTCTTGATATTGGTTCTTCAACTGGTGGTTTTACTGATGTAATGCTTCAAAATGGTGCCAAA
TTAGTCTATGCTTTAGATGTTGGAACCAATCAATTGGCTTGGAAAATTCGCTCAGATGAACGCGTTGTCGTTATGGAACA
ATTTAATTTCCGAAATGCTGTTTTAGCTGACTTTGAACAAGGAAGACCGTCATTTACTAGTATAGATGTTAGTTTTATTT
CTTTAGATTTAATTCTACCGCCACTTTATGAAATTTTGGAAAAAAATGGCGAAGTAGCAGCTCTTATTAAACCGCAGTTT
GAAGCGGGACGTGAACAAGTCGGAAAAAATGGAATTATTCGTGACCCCAAAGTTCACCAAATGACTATTGAAAAAGTTTT
AAAAACAGCCACTCAACTTGGTTTTTCAGTAAAAGGTTTGACCTTTTCGCCAATCAAGGGTGGGGCTGGAAACGTTGAAT
TTCTTGTCCATTTACTTAAAGATGGAAAAGCCGAAATTGCTCAGCAGGTTAATATTGAATCAGTTTTACAAAAAGAAAGT
GAAGAACTATGA

Upstream 100 bases:

>100_bases
ATAATTACTATAAAGAAAGATCTACATGAAAGAAAGAATTGACGTACTTGCCACGAATCAAGGTTTGTTTGAAACACGAG
AGCAGGCCAAAAGAGGAGTA

Downstream 100 bases:

>100_bases
AAAGAGAAGACCGATTAAACTTTATTGCTCAATTTATCCGTGAAAACGAAATTAAAACGCAAGAAGAACTTGTGAATACC
CTCTTAACTCATGGAATTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MAGLVVDSKSGERYDKPGQKIDDGTELRLKGEKLRYVSRGGLKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAK
LVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFISLDLILPPLYEILEKNGEVAALIKPQF
EAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIKGGAGNVEFLVHLLKDGKAEIAQQVNIESVLQKES
EEL

Sequences:

>Translated_243_residues
MAGLVVDSKSGERYDKPGQKIDDGTELRLKGEKLRYVSRGGLKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAK
LVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFISLDLILPPLYEILEKNGEVAALIKPQF
EAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIKGGAGNVEFLVHLLKDGKAEIAQQVNIESVLQKES
EEL
>Mature_242_residues
AGLVVDSKSGERYDKPGQKIDDGTELRLKGEKLRYVSRGGLKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKL
VYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFISLDLILPPLYEILEKNGEVAALIKPQFE
AGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIKGGAGNVEFLVHLLKDGKAEIAQQVNIESVLQKESE
EL

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 26792; Mature: 26661

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS00014 ER_TARGET

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGLVVDSKSGERYDKPGQKIDDGTELRLKGEKLRYVSRGGLKLEKALKEFHLEINGKTC
CCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCHHHHHHHHHEEEECCCEE
LDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ
EEECCCCCCHHHHEECCCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCCHHHHHHHHC
GRPSFTSIDVSFISLDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQ
CCCCEEEEEEEEEEEEHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCCCCCCHHH
MTIEKVLKTATQLGFSVKGLTFSPIKGGAGNVEFLVHLLKDGKAEIAQQVNIESVLQKES
HHHHHHHHHHHHHCCEECCCEECCCCCCCCCHHHHHHHHHCCHHHHHHHCCHHHHHHHHH
EEL
CCC
>Mature Secondary Structure 
AGLVVDSKSGERYDKPGQKIDDGTELRLKGEKLRYVSRGGLKLEKALKEFHLEINGKTC
CCEEEECCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCHHHHHHHHHEEEECCCEE
LDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ
EEECCCCCCHHHHEECCCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCCHHHHHHHHC
GRPSFTSIDVSFISLDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQ
CCCCEEEEEEEEEEEEHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCCCCCCHHH
MTIEKVLKTATQLGFSVKGLTFSPIKGGAGNVEFLVHLLKDGKAEIAQQVNIESVLQKES
HHHHHHHHHHHHHCCEECCCEECCCCCCCCCHHHHHHHHHCCHHHHHHHCCHHHHHHHHH
EEL
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]