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The map label for this gene is cydA

Identifier: 15672686

GI number: 15672686

Start: 707710

End: 709185

Strand: Direct

Name: cydA

Synonym: L107726

Alternate gene names: 15672686

Gene position: 707710-709185 (Clockwise)

Preceding gene: 15672685

Following gene: 15672687

Centisome position: 29.92

GC content: 37.67

Gene sequence:

>1476_bases
ATGTTTACCATTGAAACTCTCGCACGCTTTCAGTTTGCGATGACGACAATCTTCCACTTTTTCTTTGTACCACTTTCTGT
CGGAATGGTTCTCATGACAGCAATCATGGAAACTATCTATGTGAAAACTGGTGATGAAAAATGGAAAAAACGGACGAAAT
TTTTTGGATCAATTATGCTCTTATCCTTTGCAGTAGGGGTCGTAACTGGTATTATCCAAGAATTTCAATTTGGAATGAAC
TGGTCAGATTATTCTCGCTATGTTGGTGATATATTTGGCGCGCCTTTAGCCGTTGAGGCCTTACTTGCCTTCTTCTTGGA
ATCTACATTCCTTGGAGTATGGATGTTTGGTTGGGATAAATTGGGTAAGAAATTGCACAATGCAACACTTTGGATTGTAT
TTGTTGGGACCTTCTTATCATCTTTATGGATTTTAGCGGCAAACTCATGGATGCAAAATCCAGTGGGATATGAAGTTAAA
GGTGGACGAGCAACATTAACAAGTTTCTCTGCCCTTTTGACAAATCCTCAAACTATTTTGGAATTTAGCCACGTGGCAAC
AGGTTTCCTTGTAACTGGTGGTTTTGTGGTTGCTGGTATTTCAGCTTATCAAATTCTTAAAAATCGTGAAATTGATATGT
TTAAACCAGTTTTACGTTTAGGACTTTTAGTAGCTCTAATCGGTGCAGTTGGTAACTTTGTTGCTGGTGACCAACAAATG
ATTGAAGTTAAAAACTCTCAACCTATGAAATTTGCTGCAACTGAAGGGGTTTATGAAACAACACCTGACCCTGCGGCTTG
GGATATGGTTGCCTTCTTTAATGAAGCTGACCACAAAGAAGTATTTGGAATTCAAATTCCTTATATGCTTTCAATTCTGA
CTTATCACCGTCCAAGCGGTTCGGTTGAAGGGATGAATGAAATTAACGCTCAACTTCAAAAGAAATATCCTGATGTAGCT
AAAGAAATTGGCGGTAATTTCTTCCCACCAGTAACGGTTCTCTTCTGGACTTTCCGGATTATGGCCGGTCTATCAATGTT
AATGATTTTACTTTCTGCTCTGGGGCTATTTTGGACTAGAAAGAAAAAACCAAGTCTATATGAAAATAAGTTTGGCTTAC
AAGTTTATCGTTGGATGCTATTTGCACCTTTCCTTGCGATTACCTCAGGTTGGTTAGTTACTGAACTTGGTCGTTATCCT
TGGACCGTTTATGGTTTATTTACAATAAAAGATTCAGTTTCACCAAATGTTTCTGTCGGTTCACTTTTATTCTCAAATAT
CGTCTATTTCTTCCTTTTCTGTTTCCTTGGTGCTGTGATGGTTTACTTTACGCTTCAAAGAATGAAACAAGGAGTAGAAG
GAGCGGAAACAGCTTATGTTTCTTTAGATTCATTTAGTCAAGAAAATTTTGCTTCTTCATCAAAAGAAGATAGTGAAATT
CAAAAAGAAACTGATGAGAAAGGGGTGGATAAATAA

Upstream 100 bases:

>100_bases
AAGAGTTCATATGAGATGAGCTTGGCTGGCTAACTTGGACTTGCAATTTGCGGTCTATATCTATTTGATATATAGTAAAT
AAAAAATAAGGAGATAAACA

Downstream 100 bases:

>100_bases
TGACTGGATTACAACTTTTTTGGTTTATTATTGTTGGAGTATTATTTAGTGGCTTTTTCTTCCTCGAAGGTTTTGACTAC
GGTGTAGGAATGAGTGCAAT

Product: cytochrome D ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 491; Mature: 491

Protein sequence:

>491_residues
MFTIETLARFQFAMTTIFHFFFVPLSVGMVLMTAIMETIYVKTGDEKWKKRTKFFGSIMLLSFAVGVVTGIIQEFQFGMN
WSDYSRYVGDIFGAPLAVEALLAFFLESTFLGVWMFGWDKLGKKLHNATLWIVFVGTFLSSLWILAANSWMQNPVGYEVK
GGRATLTSFSALLTNPQTILEFSHVATGFLVTGGFVVAGISAYQILKNREIDMFKPVLRLGLLVALIGAVGNFVAGDQQM
IEVKNSQPMKFAATEGVYETTPDPAAWDMVAFFNEADHKEVFGIQIPYMLSILTYHRPSGSVEGMNEINAQLQKKYPDVA
KEIGGNFFPPVTVLFWTFRIMAGLSMLMILLSALGLFWTRKKKPSLYENKFGLQVYRWMLFAPFLAITSGWLVTELGRYP
WTVYGLFTIKDSVSPNVSVGSLLFSNIVYFFLFCFLGAVMVYFTLQRMKQGVEGAETAYVSLDSFSQENFASSSKEDSEI
QKETDEKGVDK

Sequences:

>Translated_491_residues
MFTIETLARFQFAMTTIFHFFFVPLSVGMVLMTAIMETIYVKTGDEKWKKRTKFFGSIMLLSFAVGVVTGIIQEFQFGMN
WSDYSRYVGDIFGAPLAVEALLAFFLESTFLGVWMFGWDKLGKKLHNATLWIVFVGTFLSSLWILAANSWMQNPVGYEVK
GGRATLTSFSALLTNPQTILEFSHVATGFLVTGGFVVAGISAYQILKNREIDMFKPVLRLGLLVALIGAVGNFVAGDQQM
IEVKNSQPMKFAATEGVYETTPDPAAWDMVAFFNEADHKEVFGIQIPYMLSILTYHRPSGSVEGMNEINAQLQKKYPDVA
KEIGGNFFPPVTVLFWTFRIMAGLSMLMILLSALGLFWTRKKKPSLYENKFGLQVYRWMLFAPFLAITSGWLVTELGRYP
WTVYGLFTIKDSVSPNVSVGSLLFSNIVYFFLFCFLGAVMVYFTLQRMKQGVEGAETAYVSLDSFSQENFASSSKEDSEI
QKETDEKGVDK
>Mature_491_residues
MFTIETLARFQFAMTTIFHFFFVPLSVGMVLMTAIMETIYVKTGDEKWKKRTKFFGSIMLLSFAVGVVTGIIQEFQFGMN
WSDYSRYVGDIFGAPLAVEALLAFFLESTFLGVWMFGWDKLGKKLHNATLWIVFVGTFLSSLWILAANSWMQNPVGYEVK
GGRATLTSFSALLTNPQTILEFSHVATGFLVTGGFVVAGISAYQILKNREIDMFKPVLRLGLLVALIGAVGNFVAGDQQM
IEVKNSQPMKFAATEGVYETTPDPAAWDMVAFFNEADHKEVFGIQIPYMLSILTYHRPSGSVEGMNEINAQLQKKYPDVA
KEIGGNFFPPVTVLFWTFRIMAGLSMLMILLSALGLFWTRKKKPSLYENKFGLQVYRWMLFAPFLAITSGWLVTELGRYP
WTVYGLFTIKDSVSPNVSVGSLLFSNIVYFFLFCFLGAVMVYFTLQRMKQGVEGAETAYVSLDSFSQENFASSSKEDSEI
QKETDEKGVDK

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=509, Percent_Identity=34.7740667976424, Blast_Score=298, Evalue=7e-82,
Organism=Escherichia coli, GI87081779, Length=493, Percent_Identity=36.7139959432049, Blast_Score=296, Evalue=3e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 55193; Mature: 55193

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCCCCC
>Mature Secondary Structure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HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]