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The map label for this gene is cydB

Identifier: 15672687

GI number: 15672687

Start: 709185

End: 710180

Strand: Direct

Name: cydB

Synonym: L109201

Alternate gene names: 15672687

Gene position: 709185-710180 (Clockwise)

Preceding gene: 15672686

Following gene: 30024006

Centisome position: 29.98

GC content: 36.55

Gene sequence:

>996_bases
ATGACTGGATTACAACTTTTTTGGTTTATTATTGTTGGAGTATTATTTAGTGGCTTTTTCTTCCTCGAAGGTTTTGACTA
CGGTGTAGGAATGAGTGCAATCACAATTGCCAAGGACAAACGTGAGGTTGAACAAGCTATCGGATCAATTGGCCCAGTTT
GGGATTTGAATGAAGTTTGGTTATTAACTGCCGGTGGGGCAATGTTTGCTTCATTCCCTTATTGGTATGCTTCATTGTTC
TCTGGTTTCTATCTTATTCTATTTTTGATTTTAGTAGGTTTGATTTTCCGGGGAGTAACATTTGAATTTCGTCATCACTC
ACATACGGAAAAAGGAAAAATGCTCTGGACAAAAGTTTTGGGCGTTGCAAGTTTTGCTATTCCATTTCTCTTTGGATTGA
TGTTTACAAGTATGATTCAAGGCGTTCCAATGGATGCTAAAGGAAATGTGACTGCTACTTTTACTACTTACGTTAACTTT
TTGTCAGTCGTTGGTGGTGTTGCTGTAATGCTCTTAGCTGGGCTTCATGGCTTAAATTATTTAGCTTTGAAAACAGAGGG
AGCTTTGCGTGAGAGAGCTGCAAAGGTAGCTAATATCCTCTATTTTGTTCTTTATGCTGGTGAAGTTGTATTTGCTGTAT
TGCTAGCTATTTTCACTGATTTCTTTGAAAAACATTTTATTGGAACTTTAGTTTTACTTGCTTTGATTGTTATTCTAACT
CTTGTGGCACATTTATCTGTTCGTGCAGGAAAAGAAATGTCTGCTTTCTTGGCTTCAGGTTTGACTTTCATTGCCCTTGT
TGCATTGATTTTCCAAGGGATTTTCCCACGTGTAATGATTGCAACTAACCCTGCTCACAGTATTTTGATTAAAAATGCTA
GTTCAACAGGCTATACTTTGAAAACAATGACGATCATTACTCTGGTTATCTTACCATTTGTACTCATCTATATGGGCTGG
ACCTATTTCATTTTCAGAAAAAGAATTAAAAAATAA

Upstream 100 bases:

>100_bases
ATGTTTCTTTAGATTCATTTAGTCAAGAAAATTTTGCTTCTTCATCAAAAGAAGATAGTGAAATTCAAAAAGAAACTGAT
GAGAAAGGGGTGGATAAATA

Downstream 100 bases:

>100_bases
AACATGAAAATAACTGGTTGAACCAGTTATTTTCAGATTAGTTTGTAAATTGATATAATTAATTAAGACAACTACATATT
ATGGTCAGGAAAATTTTTTC

Product: cytochrome D ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MTGLQLFWFIIVGVLFSGFFFLEGFDYGVGMSAITIAKDKREVEQAIGSIGPVWDLNEVWLLTAGGAMFASFPYWYASLF
SGFYLILFLILVGLIFRGVTFEFRHHSHTEKGKMLWTKVLGVASFAIPFLFGLMFTSMIQGVPMDAKGNVTATFTTYVNF
LSVVGGVAVMLLAGLHGLNYLALKTEGALRERAAKVANILYFVLYAGEVVFAVLLAIFTDFFEKHFIGTLVLLALIVILT
LVAHLSVRAGKEMSAFLASGLTFIALVALIFQGIFPRVMIATNPAHSILIKNASSTGYTLKTMTIITLVILPFVLIYMGW
TYFIFRKRIKK

Sequences:

>Translated_331_residues
MTGLQLFWFIIVGVLFSGFFFLEGFDYGVGMSAITIAKDKREVEQAIGSIGPVWDLNEVWLLTAGGAMFASFPYWYASLF
SGFYLILFLILVGLIFRGVTFEFRHHSHTEKGKMLWTKVLGVASFAIPFLFGLMFTSMIQGVPMDAKGNVTATFTTYVNF
LSVVGGVAVMLLAGLHGLNYLALKTEGALRERAAKVANILYFVLYAGEVVFAVLLAIFTDFFEKHFIGTLVLLALIVILT
LVAHLSVRAGKEMSAFLASGLTFIALVALIFQGIFPRVMIATNPAHSILIKNASSTGYTLKTMTIITLVILPFVLIYMGW
TYFIFRKRIKK
>Mature_330_residues
TGLQLFWFIIVGVLFSGFFFLEGFDYGVGMSAITIAKDKREVEQAIGSIGPVWDLNEVWLLTAGGAMFASFPYWYASLFS
GFYLILFLILVGLIFRGVTFEFRHHSHTEKGKMLWTKVLGVASFAIPFLFGLMFTSMIQGVPMDAKGNVTATFTTYVNFL
SVVGGVAVMLLAGLHGLNYLALKTEGALRERAAKVANILYFVLYAGEVVFAVLLAIFTDFFEKHFIGTLVLLALIVILTL
VAHLSVRAGKEMSAFLASGLTFIALVALIFQGIFPRVMIATNPAHSILIKNASSTGYTLKTMTIITLVILPFVLIYMGWT
YFIFRKRIKK

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=362, Percent_Identity=32.5966850828729, Blast_Score=164, Evalue=6e-42,
Organism=Escherichia coli, GI1787213, Length=364, Percent_Identity=29.3956043956044, Blast_Score=134, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36652; Mature: 36521

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGLQLFWFIIVGVLFSGFFFLEGFDYGVGMSAITIAKDKREVEQAIGSIGPVWDLNEVW
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
LLTAGGAMFASFPYWYASLFSGFYLILFLILVGLIFRGVTFEFRHHSHTEKGKMLWTKVL
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHH
GVASFAIPFLFGLMFTSMIQGVPMDAKGNVTATFTTYVNFLSVVGGVAVMLLAGLHGLNY
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCE
LALKTEGALRERAAKVANILYFVLYAGEVVFAVLLAIFTDFFEKHFIGTLVLLALIVILT
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVAHLSVRAGKEMSAFLASGLTFIALVALIFQGIFPRVMIATNPAHSILIKNASSTGYTL
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCCHH
KTMTIITLVILPFVLIYMGWTYFIFRKRIKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TGLQLFWFIIVGVLFSGFFFLEGFDYGVGMSAITIAKDKREVEQAIGSIGPVWDLNEVW
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEE
LLTAGGAMFASFPYWYASLFSGFYLILFLILVGLIFRGVTFEFRHHSHTEKGKMLWTKVL
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHH
GVASFAIPFLFGLMFTSMIQGVPMDAKGNVTATFTTYVNFLSVVGGVAVMLLAGLHGLNY
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCE
LALKTEGALRERAAKVANILYFVLYAGEVVFAVLLAIFTDFFEKHFIGTLVLLALIVILT
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVAHLSVRAGKEMSAFLASGLTFIALVALIFQGIFPRVMIATNPAHSILIKNASSTGYTL
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCCHH
KTMTIITLVILPFVLIYMGWTYFIFRKRIKK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]