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The map label for this gene is recO

Identifier: 15672040

GI number: 15672040

Start: 57858

End: 58613

Strand: Direct

Name: recO

Synonym: L1006

Alternate gene names: 15672040

Gene position: 57858-58613 (Clockwise)

Preceding gene: 15672039

Following gene: 15672049

Centisome position: 2.45

GC content: 34.13

Gene sequence:

>756_bases
ATGCGTGATGCCGAAACTCAAGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCGCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGA
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCAGATATTATGAAATAA

Upstream 100 bases:

>100_bases
GAGCAATCGGTCAGTAAAATTAAAAATCATTGATAACAGTTAGAAGAGTTGTCAGTGATTTTTTTGATATAATGAAATAA
AATATCGAAAGGAGAAAATC

Downstream 100 bases:

>100_bases
ATCTGTGGATAAGTCGCTAGAAGTTCTGTCAGTAAATTTATCCACAGTGGAAAACTTAAAATTACTGACAGAAACCTCTA
AATATTTCTGTCAGTAAAAA

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Sequences:

>Translated_251_residues
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK
>Mature_251_residues
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_LACLA (Q9CJD9)

Other databases:

- EMBL:   AE005176
- PIR:   B86632
- RefSeq:   NP_266214.1
- ProteinModelPortal:   Q9CJD9
- GeneID:   1113661
- GenomeReviews:   AE005176_GR
- KEGG:   lla:L1006
- NMPDR:   fig|272623.1.peg.63
- HOGENOM:   HBG634481
- OMA:   VMARGAK
- ProtClustDB:   PRK00085
- BioCyc:   LLAC272623:L1006-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 28704; Mature: 28704

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTAT
CCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHCCCEEEEE
INDGGFSFIEDVSEVVVYKNISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLE
EECCCHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
LLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKTVGPFDFSYKFSGCLCPQHFDED
HHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCEECCCEECHHHHHHH
LRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
HHHHCCCCCHHHHHHHHHHCCHHHHHHEEECCCCHHHHHHHHHHHHHHHHCEEECCHHHH
DGMSGWADIMK
HHHHHHHHHCC
>Mature Secondary Structure
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTAT
CCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHCCCEEEEE
INDGGFSFIEDVSEVVVYKNISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLE
EECCCHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
LLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKTVGPFDFSYKFSGCLCPQHFDED
HHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCEECCCEECHHHHHHH
LRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
HHHHCCCCCHHHHHHHHHHCCHHHHHHEEECCCCHHHHHHHHHHHHHHHHCEEECCHHHH
DGMSGWADIMK
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471