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The map label for this gene is xseB

Identifier: 15835223

GI number: 15835223

Start: 725946

End: 726164

Strand: Direct

Name: xseB

Synonym: TC0606

Alternate gene names: 15835223

Gene position: 725946-726164 (Clockwise)

Preceding gene: 15835222

Following gene: 15835224

Centisome position: 67.66

GC content: 42.47

Gene sequence:

>219_bases
ATGACAAAAAAGGCTAAAAACGTGGAAAAAGTTCCCTTTGAAGACGCAATGAAACGCTTGGAAGAGATTATAGATCTCAT
GAATCAGCCAACAACGGCTTTAGAAGCTTCTCTCGCTTTATATGAAGAAGCCGATCAGTTGATGCGCATATGCGAGTCCC
GCATCCAAGAAGTTGAAGCACGTATTAAACAGCTCTCCGATCAACGGAGCGAATCATAA

Upstream 100 bases:

>100_bases
GTTATCATTTCAGCTGAATCTCTTAAGCAAAGCGATCTTGTGCGGGTCTGCCTCCAAGACGGTGAAGCAGTTTTATCAGT
AAAAGAAGTTTGGCTGAACA

Downstream 100 bases:

>100_bases
TCGGCTATGCAAGAAGTCTTTGTTCCCGACGCAAGTCATTTGGATGACATTATACAACGCCTTCTTGTCTTACAGAAGGA
ACTGGATAGTTGCCATTCCA

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 72; Mature: 71

Protein sequence:

>72_residues
MTKKAKNVEKVPFEDAMKRLEEIIDLMNQPTTALEASLALYEEADQLMRICESRIQEVEARIKQLSDQRSES

Sequences:

>Translated_72_residues
MTKKAKNVEKVPFEDAMKRLEEIIDLMNQPTTALEASLALYEEADQLMRICESRIQEVEARIKQLSDQRSES
>Mature_71_residues
TKKAKNVEKVPFEDAMKRLEEIIDLMNQPTTALEASLALYEEADQLMRICESRIQEVEARIKQLSDQRSES

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_CHLMU (Q9PK64)

Other databases:

- EMBL:   AE002160
- PIR:   C81684
- RefSeq:   NP_296982.1
- ProteinModelPortal:   Q9PK64
- SMR:   Q9PK64
- GeneID:   1245968
- GenomeReviews:   AE002160_GR
- KEGG:   cmu:TC0606
- TIGR:   TC_0606
- HOGENOM:   HBG728416
- OMA:   CESRIRK
- ProtClustDB:   PRK00977
- BioCyc:   CMUR243161:TC_0606-MONOMER
- BRENDA:   3.1.11.6
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 8342; Mature: 8210

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKAKNVEKVPFEDAMKRLEEIIDLMNQPTTALEASLALYEEADQLMRICESRIQEVEA
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIKQLSDQRSES
HHHHHHHHCCCC
>Mature Secondary Structure 
TKKAKNVEKVPFEDAMKRLEEIIDLMNQPTTALEASLALYEEADQLMRICESRIQEVEA
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIKQLSDQRSES
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10684935