| Definition | Halobacterium sp. NRC-1 plasmid pNRC200, complete sequence. |
|---|---|
| Accession | NC_002608 |
| Length | 365,425 |
Click here to switch to the map view.
The map label for this gene is Not Available
Identifier: 16120305
GI number: 16120305
Start: 326500
End: 326877
Strand: Reverse
Name: Not Available
Synonym: VNG6429H
Alternate gene names: NA
Gene position: 326877-326500 (Counterclockwise)
Preceding gene: 16120307
Following gene: 16120304
Centisome position: 89.45
GC content: 60.05
Gene sequence:
>378_bases ATGTCGCCGGTATCACGGGCTGCAGTAGCCCGGCCCGCGAATGGTGGAGACGTCGATCCTGAAGGTCGTTCGAGACGGGC GAGGAACACCCTTCCTCCCCGGCGACAACTGACGGCGAGTCCCACATCAAAGCCCCTCCCTCAACGAGCGAACCCCTTAC GGGTGAGCGAAGTAGGGTGGGGTCGGTTACTCGAGGGGGAGGACGGCCACGGTAGCGAAGTGTCTGTACCACACCCCCTC ACCGTTTTTCCTGAGAGTAGCTGTTTCGGGAAGAAGCGGTTGTCGTCGATGGCCTTCCAACCACTACCGCATACAGCTAC AGCACGAGGGTGTCATAGAGCGATTCGCATAGAGTCTCTTTCGTCGCAACCGTGGTGA
Upstream 100 bases:
>100_bases TTTTCCGGCATGGACACCTGAAAACCGCACCGCCTCACCTTTCAATCCTTATCTGAACACTGCCGGCCTATCCGCTCAGG AACCAGTGATACCGTCGCAC
Downstream 100 bases:
>100_bases ACTATCCGTTCATTAGAGCGGGGTTAGTGAACGCACCTCCGTGTGCAAAATGGCGCGGGTTCAGACCACACACCCCCGCT TGCCGAATGTAGAATAACCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 125; Mature: 124
Protein sequence:
>125_residues MSPVSRAAVARPANGGDVDPEGRSRRARNTLPPRRQLTASPTSKPLPQRANPLRVSEVGWGRLLEGEDGHGSEVSVPHPL TVFPESSCFGKKRLSSMAFQPLPHTATARGCHRAIRIESLSSQPW
Sequences:
>Translated_125_residues MSPVSRAAVARPANGGDVDPEGRSRRARNTLPPRRQLTASPTSKPLPQRANPLRVSEVGWGRLLEGEDGHGSEVSVPHPL TVFPESSCFGKKRLSSMAFQPLPHTATARGCHRAIRIESLSSQPW >Mature_124_residues SPVSRAAVARPANGGDVDPEGRSRRARNTLPPRRQLTASPTSKPLPQRANPLRVSEVGWGRLLEGEDGHGSEVSVPHPLT VFPESSCFGKKRLSSMAFQPLPHTATARGCHRAIRIESLSSQPW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13553; Mature: 13422
Theoretical pI: Translated: 11.76; Mature: 11.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPVSRAAVARPANGGDVDPEGRSRRARNTLPPRRQLTASPTSKPLPQRANPLRVSEVGW CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC GRLLEGEDGHGSEVSVPHPLTVFPESSCFGKKRLSSMAFQPLPHTATARGCHRAIRIESL CEEECCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC SSQPW CCCCC >Mature Secondary Structure SPVSRAAVARPANGGDVDPEGRSRRARNTLPPRRQLTASPTSKPLPQRANPLRVSEVGW CCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC GRLLEGEDGHGSEVSVPHPLTVFPESSCFGKKRLSSMAFQPLPHTATARGCHRAIRIESL CEEECCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC SSQPW CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA