| Definition | Halobacterium sp. NRC-1 plasmid pNRC200, complete sequence. |
|---|---|
| Accession | NC_002608 |
| Length | 365,425 |
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Identifier: 16120189
GI number: 16120189
Start: 206380
End: 208347
Strand: Direct
Name: Not Available
Synonym: VNG6268C
Alternate gene names: NA
Gene position: 206380-208347 (Clockwise)
Preceding gene: 16120184
Following gene: 16120190
Centisome position: 56.48
GC content: 65.14
Gene sequence:
>1968_bases ATGCCACAAGACCCATCGGAGTCACCATCCACGGCGGACACGAATCGCACGACAAATGACCACACACGGCCTGGGCCGGC TCCAACCGTTCCCGCCGGAAAGAACGTCGCCGAGCTCACCGTCAAGGCGGTGTTGATCGGGCTCGCGCTCAACGTGTTGC TGCTCACTGCGAACATGTACCTCGGGATGCGGTCGGGGCTCACGATCAGCGCCTCGATCCCGGCGGCAGTCATCAGCATG GGACTGTTCTACGCGCTGCGGTACGCGGGCATCGGCGGCACGATCCTGGAGAACAACATCGTACAGACGATGACTTCGGC GGGCGAGGCACTGGCCGCCGGTGTGATCTTCACGATCGCGGGCGTCACGTTCCTCGATCAGTCCATCAACATCGTCGAAA CCGCGGCCGTGGCTGCGTTGGGTGGGCTGCTCGGCGTGCTGTTCATGATCCCGATGCGGCGGTATCTCATCGTCGACAAG CACGAACAGCTGCCCTACCCCGAGGGCACGGCGTGTGCGGACGTGCTCGAAACCGGCTCGGAAGGCGACGGCGGGGTGAA ACTCATCTCACTGGGATTCTTCGTGAGCTTCATCTACATGTGGTTGGCCAACGGCATGGCCGTGATGAAGACGACCCTCG AAACGGCGTTCTCGGCGGGTCAGACCCGCGGGTTCGCGATCGGCGGTGACTTCACGCCCGCCCTGATCGGCGTCGGCTAC ATCATCGGTCCGCGGATCGCAGCGTACGTGTTCGGTGGCGGGCTGGTGGCGTGGATGATGTTGATCCCGCTGCTCATCAC GGGCGGGTTTGTGCCCGATCAGGCGGCGAATCTCACCCTGATGGGACAAGCACACGCGGTCTGGGATCAGTACGTGCGAT ACATCGGTGCGGGCGCGATGATCGTGGGCGGGTTCTACGCGATCATCTCGATGGCTGGAACGATCCGCGACGCGCTTGCG TCCGCGGCCGCCGAACTCAGCGGCTCCAAATCGGAAACCGCGACACAGATCCCCCGAACCCAGCGCGACCTCTCGATGAA AGTGGTCGTGCTCGGGGCGCTCGCGATCACGATCGCGCTGGTTGCGATCCCACAGGTCGAACTCGGCGTTCTGGGCGGTG TCATTGCCGTGGTCGCCGCGTTCCTGTTCGTTGCGGTGTCCGCGTACCTGGTCGGGGTCGTCGGCAGCTCGTCGAACCCA GTCTCCGGGATGGCGGTCGCGACCGTCCTGATCGCCGCACTCGCGATGAAATCCACCGGCGTCTCGGATCCGGTCGTGGT GCTCTTGACCGCCTCCGTTGTTGCGATCGCCGCGGCGGTCGCCGGCGACACCTCACAGGACCTGAAAACCGGCTACCTGC TCGGCGCAACCCCACGCAAACAGCAGATCGCACAGATGGTCGGGATCGCGATCTCGTCGGTGTTCGCGGGCTGGGTGCTG TCGTTTTTCAACCAAGCGTACGGCATCGGAAGCGAGACGATCCCCGCTCCGCAGGCCGGCATGATGGCGCTGATCTCGGA GGGAGTGCTCACTGGAAGCGCGCAGTGGGGGATGATCCTCATCGGTGCCGTCTTCGCGATCGTGTTGATCATGATGGACG TCCCCGTGTTGCCGTTCTCGGTCGGCATCTACCTCCCGATCACGCTCGCCACGCCGATCTTCCTCGGCGGGCTGCTGCGG GCGGGCGTCGACCGATACGTTGACTGGCGCAGCGACGACGGCGACGGGGCGGCAAAGGAACGTGCGACCTACCGCGGCCG AATCATTGCCGCCGGGCTGATCACTGGCGAGGCGATCATGGGGATCGTCGTCGGCGGGATCTACGTGCTCGGGATCGGCG CCGACGAGGGCGCGCCGTACGCGGTGGGACTCGCATCCGGCACACAGACGCTGCTCGGTGGCGTGGCGCTCGTCGCTCTC GTCGCCGTCTTCGTCGGCGGCGTCATCCGCGACCCACAGGACACATGA
Upstream 100 bases:
>100_bases CGACGATTTAGCATACATACGAAATCCGGTAGTTCGGTTGGTGTGGTCGGTGGGCTGCGCGACGACGGCGCAGGTGTGGA GACGACCGCCCGATTCGATT
Downstream 100 bases:
>100_bases CAACACACGCGCCAACTGCGATTCCGGAGCGCACAACAGAGGAGTGGACGGTCACGCAGACCGACGACGTGGTGCAGGTC ACGATCACGCGAACGGTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 655; Mature: 654
Protein sequence:
>655_residues MPQDPSESPSTADTNRTTNDHTRPGPAPTVPAGKNVAELTVKAVLIGLALNVLLLTANMYLGMRSGLTISASIPAAVISM GLFYALRYAGIGGTILENNIVQTMTSAGEALAAGVIFTIAGVTFLDQSINIVETAAVAALGGLLGVLFMIPMRRYLIVDK HEQLPYPEGTACADVLETGSEGDGGVKLISLGFFVSFIYMWLANGMAVMKTTLETAFSAGQTRGFAIGGDFTPALIGVGY IIGPRIAAYVFGGGLVAWMMLIPLLITGGFVPDQAANLTLMGQAHAVWDQYVRYIGAGAMIVGGFYAIISMAGTIRDALA SAAAELSGSKSETATQIPRTQRDLSMKVVVLGALAITIALVAIPQVELGVLGGVIAVVAAFLFVAVSAYLVGVVGSSSNP VSGMAVATVLIAALAMKSTGVSDPVVVLLTASVVAIAAAVAGDTSQDLKTGYLLGATPRKQQIAQMVGIAISSVFAGWVL SFFNQAYGIGSETIPAPQAGMMALISEGVLTGSAQWGMILIGAVFAIVLIMMDVPVLPFSVGIYLPITLATPIFLGGLLR AGVDRYVDWRSDDGDGAAKERATYRGRIIAAGLITGEAIMGIVVGGIYVLGIGADEGAPYAVGLASGTQTLLGGVALVAL VAVFVGGVIRDPQDT
Sequences:
>Translated_655_residues MPQDPSESPSTADTNRTTNDHTRPGPAPTVPAGKNVAELTVKAVLIGLALNVLLLTANMYLGMRSGLTISASIPAAVISM GLFYALRYAGIGGTILENNIVQTMTSAGEALAAGVIFTIAGVTFLDQSINIVETAAVAALGGLLGVLFMIPMRRYLIVDK HEQLPYPEGTACADVLETGSEGDGGVKLISLGFFVSFIYMWLANGMAVMKTTLETAFSAGQTRGFAIGGDFTPALIGVGY IIGPRIAAYVFGGGLVAWMMLIPLLITGGFVPDQAANLTLMGQAHAVWDQYVRYIGAGAMIVGGFYAIISMAGTIRDALA SAAAELSGSKSETATQIPRTQRDLSMKVVVLGALAITIALVAIPQVELGVLGGVIAVVAAFLFVAVSAYLVGVVGSSSNP VSGMAVATVLIAALAMKSTGVSDPVVVLLTASVVAIAAAVAGDTSQDLKTGYLLGATPRKQQIAQMVGIAISSVFAGWVL SFFNQAYGIGSETIPAPQAGMMALISEGVLTGSAQWGMILIGAVFAIVLIMMDVPVLPFSVGIYLPITLATPIFLGGLLR AGVDRYVDWRSDDGDGAAKERATYRGRIIAAGLITGEAIMGIVVGGIYVLGIGADEGAPYAVGLASGTQTLLGGVALVAL VAVFVGGVIRDPQDT >Mature_654_residues PQDPSESPSTADTNRTTNDHTRPGPAPTVPAGKNVAELTVKAVLIGLALNVLLLTANMYLGMRSGLTISASIPAAVISMG LFYALRYAGIGGTILENNIVQTMTSAGEALAAGVIFTIAGVTFLDQSINIVETAAVAALGGLLGVLFMIPMRRYLIVDKH EQLPYPEGTACADVLETGSEGDGGVKLISLGFFVSFIYMWLANGMAVMKTTLETAFSAGQTRGFAIGGDFTPALIGVGYI IGPRIAAYVFGGGLVAWMMLIPLLITGGFVPDQAANLTLMGQAHAVWDQYVRYIGAGAMIVGGFYAIISMAGTIRDALAS AAAELSGSKSETATQIPRTQRDLSMKVVVLGALAITIALVAIPQVELGVLGGVIAVVAAFLFVAVSAYLVGVVGSSSNPV SGMAVATVLIAALAMKSTGVSDPVVVLLTASVVAIAAAVAGDTSQDLKTGYLLGATPRKQQIAQMVGIAISSVFAGWVLS FFNQAYGIGSETIPAPQAGMMALISEGVLTGSAQWGMILIGAVFAIVLIMMDVPVLPFSVGIYLPITLATPIFLGGLLRA GVDRYVDWRSDDGDGAAKERATYRGRIIAAGLITGEAIMGIVVGGIYVLGIGADEGAPYAVGLASGTQTLLGGVALVALV AVFVGGVIRDPQDT
Specific function: Unknown
COG id: COG1297
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the oligopeptide OPT transporter family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6321324, Length=503, Percent_Identity=23.2604373757455, Blast_Score=76, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004814 - InterPro: IPR004813 [H]
Pfam domain/function: PF03169 OPT [H]
EC number: NA
Molecular weight: Translated: 67073; Mature: 66942
Theoretical pI: Translated: 4.62; Mature: 4.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQDPSESPSTADTNRTTNDHTRPGPAPTVPAGKNVAELTVKAVLIGLALNVLLLTANMY CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LGMRSGLTISASIPAAVISMGLFYALRYAGIGGTILENNIVQTMTSAGEALAAGVIFTIA HHHCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH GVTFLDQSINIVETAAVAALGGLLGVLFMIPMRRYLIVDKHEQLPYPEGTACADVLETGS HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHCCC EGDGGVKLISLGFFVSFIYMWLANGMAVMKTTLETAFSAGQTRGFAIGGDFTPALIGVGY CCCCCEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHH IIGPRIAAYVFGGGLVAWMMLIPLLITGGFVPDQAANLTLMGQAHAVWDQYVRYIGAGAM HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCHH IVGGFYAIISMAGTIRDALASAAAELSGSKSETATQIPRTQRDLSMKVVVLGALAITIAL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHH VAIPQVELGVLGGVIAVVAAFLFVAVSAYLVGVVGSSSNPVSGMAVATVLIAALAMKSTG HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC VSDPVVVLLTASVVAIAAAVAGDTSQDLKTGYLLGATPRKQQIAQMVGIAISSVFAGWVL CCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHH SFFNQAYGIGSETIPAPQAGMMALISEGVLTGSAQWGMILIGAVFAIVLIMMDVPVLPFS HHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC VGIYLPITLATPIFLGGLLRAGVDRYVDWRSDDGDGAAKERATYRGRIIAAGLITGEAIM CHHEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCEEEEEEHHHHHHHH GIVVGGIYVLGIGADEGAPYAVGLASGTQTLLGGVALVALVAVFVGGVIRDPQDT HHHHHHHEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure PQDPSESPSTADTNRTTNDHTRPGPAPTVPAGKNVAELTVKAVLIGLALNVLLLTANMY CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LGMRSGLTISASIPAAVISMGLFYALRYAGIGGTILENNIVQTMTSAGEALAAGVIFTIA HHHCCCCEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH GVTFLDQSINIVETAAVAALGGLLGVLFMIPMRRYLIVDKHEQLPYPEGTACADVLETGS HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHCCC EGDGGVKLISLGFFVSFIYMWLANGMAVMKTTLETAFSAGQTRGFAIGGDFTPALIGVGY CCCCCEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHH IIGPRIAAYVFGGGLVAWMMLIPLLITGGFVPDQAANLTLMGQAHAVWDQYVRYIGAGAM HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCHH IVGGFYAIISMAGTIRDALASAAAELSGSKSETATQIPRTQRDLSMKVVVLGALAITIAL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHH VAIPQVELGVLGGVIAVVAAFLFVAVSAYLVGVVGSSSNPVSGMAVATVLIAALAMKSTG HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC VSDPVVVLLTASVVAIAAAVAGDTSQDLKTGYLLGATPRKQQIAQMVGIAISSVFAGWVL CCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHH SFFNQAYGIGSETIPAPQAGMMALISEGVLTGSAQWGMILIGAVFAIVLIMMDVPVLPFS HHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC VGIYLPITLATPIFLGGLLRAGVDRYVDWRSDDGDGAAKERATYRGRIIAAGLITGEAIM CHHEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCEEEEEEHHHHHHHH GIVVGGIYVLGIGADEGAPYAVGLASGTQTLLGGVALVALVAVFVGGVIRDPQDT HHHHHHHEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]