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The map label for this gene is yocR

Identifier: 16120184

GI number: 16120184

Start: 200846

End: 202105

Strand: Direct

Name: yocR

Synonym: VNG6261G

Alternate gene names: 16120184

Gene position: 200846-202105 (Clockwise)

Preceding gene: 16120183

Following gene: 16120189

Centisome position: 54.96

GC content: 66.83

Gene sequence:

>1260_bases
ATGTACCTGTTGCTCGTGGTTGGCATCGGGGTCCCGGGACTGCTCGCGGAGTTCGTGCTCGGGCGGCGTGGCCGCCAAAC
ACCCATCGGCGCGCTCCGCTCGCTGATCGGTTCCCGATGGGGGACCGCAGTGGGGACGTTCAACGTCATCACCACCGTGG
TGATGCTGTCGTTCTACTCGGTTGTCGGCGGCTGGATCCTCCGGTACACACTGCTCTCACCGACGGGCGCGTACTTCGCA
CAGCCACAACAGTACTTCAGCCACGCGAGCCACGGCCTCCCTGCAGTCGGATTCCATCTGCTGTTCCTCGGGATCATCGC
TTTGATCGTCTTCTTCGGCGTGAGCCAGGGGATCGAACGCGTCTCGAAAGTCATGCTCCCCGCGGTCGTCGTGTTGCTCG
GCGGGCTGGCTGTCTGGACGGCCACCCAACCCAACACCGCCGCCGGCTACGCGTTCTACCTCGGCTTCGACCCCGACTAC
CTCGCTGCGAATTTCTTTTCGGTGCTTGGTCCCGCCGCGGGGCAGGCACTGTTCACGCTCTCACTGGGCGCTGGCGCGAT
GCTCACGTACGCCTCCTACCTCGACGACGACGCCTCGCTGCCACGAGATACGGTCGTGATCGCGATCTCCAACACGGCGA
TCGGCGTGCTCGCCGGGCTGGTCGTCCTCCCGTTGTTGATCTCCCAGGGCATCACCCCGGGACAGGGCGGCCCCGGCGCA
CTGTTCGTTGCCCTCGCAACCGCGTTCGGTGCACTCCCGGGTGGCAACGTTGTCGCCACGGTCTTCTTTTTCACCGTGCT
GTTGGCGGCCGTGACCAGCGGCATCAACCTCCTCGAAACCCCCGTGGCGACGCTTGTCGACAACTACAACGCCTCCCGGC
GGGTCGCGACGGCGGCAGTGACACTGCTGCTCGCGGCCACCGGCAGCGGGCTGGCGCTCGCCGGGCCGGCGTTCCGGTTC
GTCTCCGGCCCCGTCGTTGATGTCATGCTGACCCTAGGCTTGCTTGCGTTCCTCGGGATCGTCGGTTGGGTGCTGCGCGA
GGAGGCAGCAGCTGAGTTCCGGGCCGGTGCCGGCCGCCTCAGCGGGCTGGCGACCCCGTGGGTGGTGGCGGTTGGCTGGG
TGCTTCCGGTGGTCGTCGTGTTTTCGTTGACGACGACAGTGGCGTCCATTACCGGCGTCTCGCTGACGAACACCACGCGT
GCGGCGATCGCCGTTGGCGTGGCGGTCGCGTGCCGCACTGCCGTCACGCGAACAGCGTGA

Upstream 100 bases:

>100_bases
CGGGTTCGTGCTTGCAGCCGTCGGCAGTGCGGCAGGCCTCGGGAACATCTGGCGGTTCCCCTGGCTGACCGCCGACAACG
GCGGGAGCGCGTTCCTCGCG

Downstream 100 bases:

>100_bases
CGGAGACTGTCTCGTCGCCGGCGAGTAGCAGTGGCTCAGTCGTCGGTCGTCGTCGGGTCCGAGTTCGGGGAGATCGCCCC
CATCTCCGGCGTTTCAGTGC

Product: sodium-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MYLLLVVGIGVPGLLAEFVLGRRGRQTPIGALRSLIGSRWGTAVGTFNVITTVVMLSFYSVVGGWILRYTLLSPTGAYFA
QPQQYFSHASHGLPAVGFHLLFLGIIALIVFFGVSQGIERVSKVMLPAVVVLLGGLAVWTATQPNTAAGYAFYLGFDPDY
LAANFFSVLGPAAGQALFTLSLGAGAMLTYASYLDDDASLPRDTVVIAISNTAIGVLAGLVVLPLLISQGITPGQGGPGA
LFVALATAFGALPGGNVVATVFFFTVLLAAVTSGINLLETPVATLVDNYNASRRVATAAVTLLLAATGSGLALAGPAFRF
VSGPVVDVMLTLGLLAFLGIVGWVLREEAAAEFRAGAGRLSGLATPWVVAVGWVLPVVVVFSLTTTVASITGVSLTNTTR
AAIAVGVAVACRTAVTRTA

Sequences:

>Translated_419_residues
MYLLLVVGIGVPGLLAEFVLGRRGRQTPIGALRSLIGSRWGTAVGTFNVITTVVMLSFYSVVGGWILRYTLLSPTGAYFA
QPQQYFSHASHGLPAVGFHLLFLGIIALIVFFGVSQGIERVSKVMLPAVVVLLGGLAVWTATQPNTAAGYAFYLGFDPDY
LAANFFSVLGPAAGQALFTLSLGAGAMLTYASYLDDDASLPRDTVVIAISNTAIGVLAGLVVLPLLISQGITPGQGGPGA
LFVALATAFGALPGGNVVATVFFFTVLLAAVTSGINLLETPVATLVDNYNASRRVATAAVTLLLAATGSGLALAGPAFRF
VSGPVVDVMLTLGLLAFLGIVGWVLREEAAAEFRAGAGRLSGLATPWVVAVGWVLPVVVVFSLTTTVASITGVSLTNTTR
AAIAVGVAVACRTAVTRTA
>Mature_419_residues
MYLLLVVGIGVPGLLAEFVLGRRGRQTPIGALRSLIGSRWGTAVGTFNVITTVVMLSFYSVVGGWILRYTLLSPTGAYFA
QPQQYFSHASHGLPAVGFHLLFLGIIALIVFFGVSQGIERVSKVMLPAVVVLLGGLAVWTATQPNTAAGYAFYLGFDPDY
LAANFFSVLGPAAGQALFTLSLGAGAMLTYASYLDDDASLPRDTVVIAISNTAIGVLAGLVVLPLLISQGITPGQGGPGA
LFVALATAFGALPGGNVVATVFFFTVLLAAVTSGINLLETPVATLVDNYNASRRVATAAVTLLLAATGSGLALAGPAFRF
VSGPVVDVMLTLGLLAFLGIVGWVLREEAAAEFRAGAGRLSGLATPWVVAVGWVLPVVVVFSLTTTVASITGVSLTNTTR
AAIAVGVAVACRTAVTRTA

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI4507043, Length=433, Percent_Identity=22.4018475750577, Blast_Score=66, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24654186, Length=221, Percent_Identity=28.5067873303167, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 43006; Mature: 43006

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS00639 THIOL_PROTEASE_HIS ; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLLLVVGIGVPGLLAEFVLGRRGRQTPIGALRSLIGSRWGTAVGTFNVITTVVMLSFYS
CEEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
VVGGWILRYTLLSPTGAYFAQPQQYFSHASHGLPAVGFHLLFLGIIALIVFFGVSQGIER
HHHHHHHHHHHHCCCCHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VSKVMLPAVVVLLGGLAVWTATQPNTAAGYAFYLGFDPDYLAANFFSVLGPAAGQALFTL
HHHHHHHHHHHHHCCHHEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEE
SLGAGAMLTYASYLDDDASLPRDTVVIAISNTAIGVLAGLVVLPLLISQGITPGQGGPGA
ECCCCHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
LFVALATAFGALPGGNVVATVFFFTVLLAAVTSGINLLETPVATLVDNYNASRRVATAAV
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHH
TLLLAATGSGLALAGPAFRFVSGPVVDVMLTLGLLAFLGIVGWVLREEAAAEFRAGAGRL
HHHHHHCCCCCEECCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
SGLATPWVVAVGWVLPVVVVFSLTTTVASITGVSLTNTTRAAIAVGVAVACRTAVTRTA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MYLLLVVGIGVPGLLAEFVLGRRGRQTPIGALRSLIGSRWGTAVGTFNVITTVVMLSFYS
CEEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
VVGGWILRYTLLSPTGAYFAQPQQYFSHASHGLPAVGFHLLFLGIIALIVFFGVSQGIER
HHHHHHHHHHHHCCCCHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VSKVMLPAVVVLLGGLAVWTATQPNTAAGYAFYLGFDPDYLAANFFSVLGPAAGQALFTL
HHHHHHHHHHHHHCCHHEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEE
SLGAGAMLTYASYLDDDASLPRDTVVIAISNTAIGVLAGLVVLPLLISQGITPGQGGPGA
ECCCCHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
LFVALATAFGALPGGNVVATVFFFTVLLAAVTSGINLLETPVATLVDNYNASRRVATAAV
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHH
TLLLAATGSGLALAGPAFRFVSGPVVDVMLTLGLLAFLGIVGWVLREEAAAEFRAGAGRL
HHHHHHCCCCCEECCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
SGLATPWVVAVGWVLPVVVVFSLTTTVASITGVSLTNTTRAAIAVGVAVACRTAVTRTA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]