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The map label for this gene is gvpJ2

Identifier: 16120165

GI number: 16120165

Start: 187507

End: 187803

Strand: Reverse

Name: gvpJ2

Synonym: VNG6232G

Alternate gene names: 16120165

Gene position: 187803-187507 (Counterclockwise)

Preceding gene: 16120166

Following gene: 16120164

Centisome position: 51.39

GC content: 66.33

Gene sequence:

>297_bases
ATGAGCGACCCCAAACCAACGCGCTCACAGGGTGATCTCGCCGAAACCCTGGAGCTGCTGCTCGACAAGGGAGTGGTGGT
CAACGCCGACATCGCGGTCAGCGTCGGCGACACGGAGCTCCTCGGGGTCGAGCTTCGTGCAGCCATTGCGTCCTTCGAGA
CGGCCGCGGAGTACGGGCTTGACTTCCCGACGGGAACCGACATGGAGCGCGTGACTGCCGCCGCGGGCGTGGACGCCGAC
GACAGCAAGTCGGTGCTTGAGCGCCCTGACCCACCCACAACGGAGGGGTCGGAGTAA

Upstream 100 bases:

>100_bases
ACGCCCACTCGACCGTCCCGGAACAGCCCACGCACGCCACGACCGCGGCCCGAGCGCGGCTGTATGGGCTGCGTCTCCAC
AACACGGCGACCACCGACAA

Downstream 100 bases:

>100_bases
CATGGAGATCGCGCTTGACGACCACGACGACGAGGACCTCCAGAGCGGGCTCACGGCGCTCGTCGTGACAGTCGTCGAAC
TCCTGGTCGAGGCACTCGAA

Product: GvpJ protein, cluster B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 98; Mature: 97

Protein sequence:

>98_residues
MSDPKPTRSQGDLAETLELLLDKGVVVNADIAVSVGDTELLGVELRAAIASFETAAEYGLDFPTGTDMERVTAAAGVDAD
DSKSVLERPDPPTTEGSE

Sequences:

>Translated_98_residues
MSDPKPTRSQGDLAETLELLLDKGVVVNADIAVSVGDTELLGVELRAAIASFETAAEYGLDFPTGTDMERVTAAAGVDAD
DSKSVLERPDPPTTEGSE
>Mature_97_residues
SDPKPTRSQGDLAETLELLLDKGVVVNADIAVSVGDTELLGVELRAAIASFETAAEYGLDFPTGTDMERVTAAAGVDADD
SKSVLERPDPPTTEGSE

Specific function: Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. This protein could be important for the shape determ

COG id: NA

COG function: NA

Gene ontology:

Cell location: Vacuole, gas vesicle (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gas vesicle protein type A family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GVPJ2_HALSA (P33956)

Other databases:

- EMBL:   X64730
- EMBL:   X94688
- EMBL:   AE004438
- RefSeq:   NP_395753.1
- GeneID:   1449136
- GenomeReviews:   AE004438_GR
- KEGG:   hal:VNG6232G
- NMPDR:   fig|64091.1.peg.2437
- HOGENOM:   HBG457034
- ProtClustDB:   CLSK2752599
- BioCyc:   HSP64091:VNG6232G-MONOMER
- GO:   GO:0005773
- InterPro:   IPR000638
- InterPro:   IPR018493

Pfam domain/function: PF00741 Gas_vesicle

EC number: NA

Molecular weight: Translated: 10208; Mature: 10077

Theoretical pI: Translated: 3.73; Mature: 3.73

Prosite motif: PS00234 GAS_VESICLE_A_1; PS00669 GAS_VESICLE_A_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDPKPTRSQGDLAETLELLLDKGVVVNADIAVSVGDTELLGVELRAAIASFETAAEYGL
CCCCCCCCCCCCHHHHHHHHHCCCEEECCCEEEECCCCEEHHHHHHHHHHHHHHHHHHCC
DFPTGTDMERVTAAAGVDADDSKSVLERPDPPTTEGSE
CCCCCCCHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SDPKPTRSQGDLAETLELLLDKGVVVNADIAVSVGDTELLGVELRAAIASFETAAEYGL
CCCCCCCCCCCHHHHHHHHHCCCEEECCCEEEECCCCEEHHHHHHHHHHHHHHHHHHCC
DFPTGTDMERVTAAAGVDADDSKSVLERPDPPTTEGSE
CCCCCCCHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1404376; 8763925; 11016950