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The map label for this gene is gvpC1

Identifier: 16120004

GI number: 16120004

Start: 22804

End: 23952

Strand: Direct

Name: gvpC1

Synonym: VNG6031G

Alternate gene names: 16120004

Gene position: 22804-23952 (Clockwise)

Preceding gene: 16120003

Following gene: 16120005

Centisome position: 6.24

GC content: 57.09

Gene sequence:

>1149_bases
ATGAGTGTCACAGACAAACGCGACGAGATGAGTACTGCCCGCGATAAGTTCGCAGAATCACAGCAGGAGTTCGAATCATA
CGCTGACGAGTTTGCAGCCGATATCACGGCAAAGCAAGACGATGTCAGCGACCTTGTCGATGCGATCACCGACTTCCAGG
CGGAGATGACCAACACGACGGATGCATTTCACACATATGGTGACGAGTTCGCCGCTGAGGTTGACCACCTCCGTGCCGAT
ATTGACGCCCAGCGGGACGTGATCCGTGAGATGCAGGATGCGTTCGAGGCATATGCTGACATCTTCGCTACAGATATCGC
AGACAAACAAGATATCGGCAATCTTCTGGCTGCGATTGAGGCGCTCCGAACAGAGATGAACTCAACCCACGGGGCATTCG
AAGCATATGCGGACGACTTCGCAGCCGATGTCGCTGCGCTCCGTGATATATCTGATCTGGTTGCAGCAATCGACGACTTC
CAAGAGGAATTCATCGCCGTGCAGGACGCATTTGACAACTACGCTGGTGACTTCGATGCGGAGATCGACCAGCTCCACGC
TGCCATCGCTGACCAGCACGACAGCTTCGACGCTACCGCGGACGCCTTCGCAGAGTACCGAGATGAGTTCTATCGCATAG
AGGTGGAAGCACTGCTTGAGGCGATCAACGACTTCCAGCAGGACATCGGTGACTTCCGAGCGGAGTTTGAAACGACTGAG
GACGCGTTCGTTGCCTTCGCCCGTGACTTCTATGGCCACGAGATCACGGCCGAGGAAGGCGCCGCCGAAGCGGAAGCCGA
ACCCGTCGAGGCTGACGCGGACGTCGAAGCGGAAGCAGAAGTCTCTCCAGACGAAGCTGGCGGAGAATCCGCCGGTACCG
AGGAAGAAGAGACAGAGCCGGCCGAGGTGGAAACAGCGGCTCCAGAAGTAGAGGGGAGTCCTGCGGACACGGCAGACGAA
GCGGAAGATACGGAAGCAGAGGAGGAGACAGAGGAAGAGGCACCGGAAGACATGGTGCAGTGCCGGGTGTGCGGCGAATA
CTATCAGGCCATCACGGAGCCCCATCTCCAGACCCATGATATGACGATTCAGGAGTACCGCGACGAGTACGGTGAGGATG
TCCCCCTTCGGCCGGATGATAAAACATGA

Upstream 100 bases:

>100_bases
CCGAGGCCTGACGCACAGGCCTCCCTTCGGCCCGGCGTAAGGGAGGTGAATCGCTTGCAAACCATACTATTAACACCCTT
CTCGGGTACACACTAATCCC

Downstream 100 bases:

>100_bases
CGAACGAGTCCCGTAAACGCAAGGTACGAGGGTCGCAGATCCGCTCCTCACGCGGCGACAAGAAACAGGGGCGATCACAG
AGCCGTGATGATAAGGAGAT

Product: GvpC protein, cluster A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MSVTDKRDEMSTARDKFAESQQEFESYADEFAADITAKQDDVSDLVDAITDFQAEMTNTTDAFHTYGDEFAAEVDHLRAD
IDAQRDVIREMQDAFEAYADIFATDIADKQDIGNLLAAIEALRTEMNSTHGAFEAYADDFAADVAALRDISDLVAAIDDF
QEEFIAVQDAFDNYAGDFDAEIDQLHAAIADQHDSFDATADAFAEYRDEFYRIEVEALLEAINDFQQDIGDFRAEFETTE
DAFVAFARDFYGHEITAEEGAAEAEAEPVEADADVEAEAEVSPDEAGGESAGTEEEETEPAEVETAAPEVEGSPADTADE
AEDTEAEEETEEEAPEDMVQCRVCGEYYQAITEPHLQTHDMTIQEYRDEYGEDVPLRPDDKT

Sequences:

>Translated_382_residues
MSVTDKRDEMSTARDKFAESQQEFESYADEFAADITAKQDDVSDLVDAITDFQAEMTNTTDAFHTYGDEFAAEVDHLRAD
IDAQRDVIREMQDAFEAYADIFATDIADKQDIGNLLAAIEALRTEMNSTHGAFEAYADDFAADVAALRDISDLVAAIDDF
QEEFIAVQDAFDNYAGDFDAEIDQLHAAIADQHDSFDATADAFAEYRDEFYRIEVEALLEAINDFQQDIGDFRAEFETTE
DAFVAFARDFYGHEITAEEGAAEAEAEPVEADADVEAEAEVSPDEAGGESAGTEEEETEPAEVETAAPEVEGSPADTADE
AEDTEAEEETEEEAPEDMVQCRVCGEYYQAITEPHLQTHDMTIQEYRDEYGEDVPLRPDDKT
>Mature_381_residues
SVTDKRDEMSTARDKFAESQQEFESYADEFAADITAKQDDVSDLVDAITDFQAEMTNTTDAFHTYGDEFAAEVDHLRADI
DAQRDVIREMQDAFEAYADIFATDIADKQDIGNLLAAIEALRTEMNSTHGAFEAYADDFAADVAALRDISDLVAAIDDFQ
EEFIAVQDAFDNYAGDFDAEIDQLHAAIADQHDSFDATADAFAEYRDEFYRIEVEALLEAINDFQQDIGDFRAEFETTED
AFVAFARDFYGHEITAEEGAAEAEAEPVEADADVEAEAEVSPDEAGGESAGTEEEETEPAEVETAAPEVEGSPADTADEA
EDTEAEEETEEEAPEDMVQCRVCGEYYQAITEPHLQTHDMTIQEYRDEYGEDVPLRPDDKT

Specific function: May confer stability to the gas vesicle membranes. Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth

COG id: NA

COG function: NA

Gene ontology:

Cell location: Vacuole, gas vesicle membrane; Peripheral membrane protein; Cytoplasmic side. Note=Binds to the external surface of the gas vesicle membrane

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the halobacterial gas vesicle protein type C family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GVPC1_HALSA (P24574)

Other databases:

- EMBL:   M58557
- EMBL:   X57161
- EMBL:   X64729
- EMBL:   AF016485
- EMBL:   AE004438
- PIR:   T08243
- RefSeq:   NP_045971.1
- RefSeq:   NP_395592.1
- GeneID:   1446786
- GeneID:   1449258
- GenomeReviews:   AE004438_GR
- GenomeReviews:   AF016485_GR
- KEGG:   hal:VNG6031G
- HOGENOM:   HBG098548
- OMA:   EDDISTS
- ProtClustDB:   CLSK539586
- BioCyc:   HSP64091:GVPC-MONOMER
- BioCyc:   HSP64091:VNG6031G-MONOMER
- GO:   GO:0016020
- GO:   GO:0005773
- InterPro:   IPR008639
- InterPro:   IPR010356
- InterPro:   IPR008807
- Gene3D:   G3DSA:1.20.1170.10

Pfam domain/function: PF05465 Halo_GVPC; PF05443 ROS_MUCR

EC number: NA

Molecular weight: Translated: 42392; Mature: 42261

Theoretical pI: Translated: 3.50; Mature: 3.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVTDKRDEMSTARDKFAESQQEFESYADEFAADITAKQDDVSDLVDAITDFQAEMTNTT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCH
DAFHTYGDEFAAEVDHLRADIDAQRDVIREMQDAFEAYADIFATDIADKQDIGNLLAAIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ALRTEMNSTHGAFEAYADDFAADVAALRDISDLVAAIDDFQEEFIAVQDAFDNYAGDFDA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
EIDQLHAAIADQHDSFDATADAFAEYRDEFYRIEVEALLEAINDFQQDIGDFRAEFETTE
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
DAFVAFARDFYGHEITAEEGAAEAEAEPVEADADVEAEAEVSPDEAGGESAGTEEEETEP
HHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AEVETAAPEVEGSPADTADEAEDTEAEEETEEEAPEDMVQCRVCGEYYQAITEPHLQTHD
CHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHC
MTIQEYRDEYGEDVPLRPDDKT
CHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SVTDKRDEMSTARDKFAESQQEFESYADEFAADITAKQDDVSDLVDAITDFQAEMTNTT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCH
DAFHTYGDEFAAEVDHLRADIDAQRDVIREMQDAFEAYADIFATDIADKQDIGNLLAAIE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ALRTEMNSTHGAFEAYADDFAADVAALRDISDLVAAIDDFQEEFIAVQDAFDNYAGDFDA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
EIDQLHAAIADQHDSFDATADAFAEYRDEFYRIEVEALLEAINDFQQDIGDFRAEFETTE
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
DAFVAFARDFYGHEITAEEGAAEAEAEPVEADADVEAEAEVSPDEAGGESAGTEEEETEP
HHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AEVETAAPEVEGSPADTADEAEDTEAEEETEEEAPEDMVQCRVCGEYYQAITEPHLQTHD
CHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHC
MTIQEYRDEYGEDVPLRPDDKT
CHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1864501; 1956294; 1404376; 9847077; 11016950