Click here to switch to the map view.

The map label for this gene is gvpA1

Identifier: 16120003

GI number: 16120003

Start: 22484

End: 22714

Strand: Direct

Name: gvpA1

Synonym: VNG6029G

Alternate gene names: 16120003

Gene position: 22484-22714 (Clockwise)

Preceding gene: 16119992

Following gene: 16120004

Centisome position: 6.15

GC content: 60.17

Gene sequence:

>231_bases
ATGGCGCAACCAGATTCTTCAGGCTTGGCAGAAGTCCTTGATCGTGTACTAGACAAAGGTGTCGTTGTGGACGTGTGGGC
TCGTGTGTCGCTTGTCGGCATCGAAATCCTGACCGTCGAGGCGCGGGTCGTCGCCGCCTCGGTGGACACCTTCCTCCACT
ACGCAGAAGAAATCGCCAAGATCGAACAAGCCGAACTTACCGCCGGCGCCGAGGCGGCACCCGAGGCCTGA

Upstream 100 bases:

>100_bases
AAGTACGACTCATTACAGGAGACATAACGACTGGTGAAACCATACACATCCTTATGTGATGCCCGAGTATAGTTAGAGAT
GGGTTAATCCCAGATCACCA

Downstream 100 bases:

>100_bases
CGCACAGGCCTCCCTTCGGCCCGGCGTAAGGGAGGTGAATCGCTTGCAAACCATACTATTAACACCCTTCTCGGGTACAC
ACTAATCCCATGAGTGTCAC

Product: gas vesicle synthesis protein GvpA

Products: NA

Alternate protein names: GVP [H]

Number of amino acids: Translated: 76; Mature: 75

Protein sequence:

>76_residues
MAQPDSSGLAEVLDRVLDKGVVVDVWARVSLVGIEILTVEARVVAASVDTFLHYAEEIAKIEQAELTAGAEAAPEA

Sequences:

>Translated_76_residues
MAQPDSSGLAEVLDRVLDKGVVVDVWARVSLVGIEILTVEARVVAASVDTFLHYAEEIAKIEQAELTAGAEAAPEA
>Mature_75_residues
AQPDSSGLAEVLDRVLDKGVVVDVWARVSLVGIEILTVEARVVAASVDTFLHYAEEIAKIEQAELTAGAEAAPEA

Specific function: Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the st

COG id: NA

COG function: NA

Gene ontology:

Cell location: Vacuole, gas vesicle membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gas vesicle protein type A family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000638
- InterPro:   IPR018493 [H]

Pfam domain/function: PF00741 Gas_vesicle [H]

EC number: NA

Molecular weight: Translated: 8005; Mature: 7874

Theoretical pI: Translated: 3.94; Mature: 3.94

Prosite motif: PS00234 GAS_VESICLE_A_1 ; PS00669 GAS_VESICLE_A_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQPDSSGLAEVLDRVLDKGVVVDVWARVSLVGIEILTVEARVVAASVDTFLHYAEEIAK
CCCCCCCCHHHHHHHHHCCCCEEHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHH
IEQAELTAGAEAAPEA
HHHHHHCCCCCCCCCC
>Mature Secondary Structure 
AQPDSSGLAEVLDRVLDKGVVVDVWARVSLVGIEILTVEARVVAASVDTFLHYAEEIAK
CCCCCCCHHHHHHHHHCCCCEEHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHH
IEQAELTAGAEAAPEA
HHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9211710 [H]