| Definition | Halobacterium sp. NRC-1 plasmid pNRC200, complete sequence. |
|---|---|
| Accession | NC_002608 |
| Length | 365,425 |
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Identifier: 16119983
GI number: 16119983
Start: 1905
End: 3719
Strand: Reverse
Name: Not Available
Synonym: VNG6007H
Alternate gene names: NA
Gene position: 3719-1905 (Counterclockwise)
Preceding gene: 16119986
Following gene: 16119982
Centisome position: 1.02
GC content: 61.54
Gene sequence:
>1815_bases ATGACGTTCCGCGAGATGGTGGACGGCGCACTCAAAACCTACCCCCGCGAACAACAAGTCCGCCATAACCGCTCGGTCAC GTTAGAGGACCTCGTCACTGAAGTGCCCGTCACGTACCTCCGGTTCTACGACGAGTACGACCACGATCAGGGCCACCCGA AACCCTGGGGTGCCGTCTTCCGCGCGCACGTCCTCCGATGCGTCAAAGGCTGGAAGAACGCGACCGCGCTCCATCGCTAC CTGAAACAGCAGCCGTTTCTCTGCACGCAGTTGGGCTTCAAAGACATTCCCGACCAGTCCACACTCTACCGCGCGTGGGA CGACCGTCTCGAAGATGTCCACGACGCAGTACGAGACGCCGCCGAGGTCGTCGTGGACATCGCCCGCTACCACGACATCC CCGCGCCCGAACCCGAGTTCCTCCCCGATCAGCCAACCGATACGGTGACGAACTCAAAGAGCAAGGACACGCTCGCCCGT GAGAAAGCCCGTGAGGTTTGGAAGGGCGCGAAGCCCATCGTCGAGGACGCCTTCCATCTGGACCGCAGCGACAACGCCTC GATTCCCGAGGGCGCGTTCTGGGAGCAACAGTCCTACCTCGGAATGCGAACGGATATGCACCCGAACGACGGCGCACAGT CCTTCGCTGCGGACTCCACCCGCAGAAAGACGCCATCAGGCGACTCCCACCGGTTGCAGACGAAGACGCTCGGCGTTGAG CGCATCCGGACGATGCTCCGGGAGACTGGCCGGACGCTTGTGGCGCGAGCGAAATCGAAGGACAAGATGGGGCGCAAGCA GATGACGGCCATCGACTTCACGAAGGGCAACCCGTGGAGCGGCCACGTGGAACGCGATAGTAGTGGACAGAATCAGGAGC CGTGGATTCTCGGCTACAAGGGCGATGACGGGCCGTTCTTCCAGTGGGCAGTCATCAAACTCGTCGGCCACGACGTCCCG CTGATCCTTGATGCCGTCCCGGTTGTTCGTGGTCGAAAGCGAGCGGATATCGTAGACGATCTCCTCGAAGGCGCAACCGA CATCGTCCCTGGACTCGATTTGGTGATGATGGACCGCGAGTTCGCCCCGGACGGCGTCAAAGACGTCTGCGAGACGCACG ACGTCCACTACCTCAACCCCGGTGTCGTCCGGTCCAGCAGCGACCACGAACACCAGATCGCTAAGCTTGCCAGTGAAGAC AAAGACTTCGATGTCATCAAGCAGGAGCGATTGGACGACGGTCCGACGCGGAAGGCGGTTTACCTCCCGAAGCGCGAGTG GGAACGCGAGGACGAAGACAACGACGGGACGGATGTGACGATCCGACAGGAACTCATCGAGGACTTCAAGGACGTCGGCA ACACGACGCCGCTCTCGGAGGACCGCGACGGCGACTCGCCGCTGAGCAACCTTCTCAATGAGGTCGCCGAAGAGGAGGAG ATCGACGAGCCAGCGCGGGTCGAAGCGCCGACCCTGCCCTTTGAGACGAATCTCCCGTGGGTGGATGTCGATCCCGCCGA CCAGCAGGAGATGAAACACCAGATTGGGCGACTGATGGCCCGATACAAGCGGCGTTGGGGTATCGAGAACGGCTTCAAGA AACTGAAGACGTTCCTCGCAGAGACGCAGTCGCCCGACCACCGGTTCCGGTACTTCAACTTCGCGTTCGCCTGCGTGCTG TACAACTGCTGGCGACTTGTGGACATCCTCGTGCAGTTGGAACTGTACGGCGAGATCGGCGATCAGCCGGCAGTGTCCTC GAACTCGTTCCTGACGTTCGCCAAGAAAAGCTACGGCCTCGACCCGCCCGACTAA
Upstream 100 bases:
>100_bases TATCGAGAGTGCCAGCTACGAATCCACACCAAGAGATTACCCCGTAGACGGCCTCTACGGCTCTGACGACGGCACTCTCG TCCGCGCGGCCTCATTCGAT
Downstream 100 bases:
>100_bases CTCTCTCATTCCTCTGGGCTTGCTCGGTCGTGAGCGGCAGCGCTGTCCTAAACGCCGATTTTCCACTGGATTTGTGAGCG CTATCCGACAGGTTCCTCAG
Product: hypothetical protein
Products: NA
Alternate protein names: Transposase; Transposase Family Protein; Transposase Homolog
Number of amino acids: Translated: 604; Mature: 603
Protein sequence:
>604_residues MTFREMVDGALKTYPREQQVRHNRSVTLEDLVTEVPVTYLRFYDEYDHDQGHPKPWGAVFRAHVLRCVKGWKNATALHRY LKQQPFLCTQLGFKDIPDQSTLYRAWDDRLEDVHDAVRDAAEVVVDIARYHDIPAPEPEFLPDQPTDTVTNSKSKDTLAR EKAREVWKGAKPIVEDAFHLDRSDNASIPEGAFWEQQSYLGMRTDMHPNDGAQSFAADSTRRKTPSGDSHRLQTKTLGVE RIRTMLRETGRTLVARAKSKDKMGRKQMTAIDFTKGNPWSGHVERDSSGQNQEPWILGYKGDDGPFFQWAVIKLVGHDVP LILDAVPVVRGRKRADIVDDLLEGATDIVPGLDLVMMDREFAPDGVKDVCETHDVHYLNPGVVRSSSDHEHQIAKLASED KDFDVIKQERLDDGPTRKAVYLPKREWEREDEDNDGTDVTIRQELIEDFKDVGNTTPLSEDRDGDSPLSNLLNEVAEEEE IDEPARVEAPTLPFETNLPWVDVDPADQQEMKHQIGRLMARYKRRWGIENGFKKLKTFLAETQSPDHRFRYFNFAFACVL YNCWRLVDILVQLELYGEIGDQPAVSSNSFLTFAKKSYGLDPPD
Sequences:
>Translated_604_residues MTFREMVDGALKTYPREQQVRHNRSVTLEDLVTEVPVTYLRFYDEYDHDQGHPKPWGAVFRAHVLRCVKGWKNATALHRY LKQQPFLCTQLGFKDIPDQSTLYRAWDDRLEDVHDAVRDAAEVVVDIARYHDIPAPEPEFLPDQPTDTVTNSKSKDTLAR EKAREVWKGAKPIVEDAFHLDRSDNASIPEGAFWEQQSYLGMRTDMHPNDGAQSFAADSTRRKTPSGDSHRLQTKTLGVE RIRTMLRETGRTLVARAKSKDKMGRKQMTAIDFTKGNPWSGHVERDSSGQNQEPWILGYKGDDGPFFQWAVIKLVGHDVP LILDAVPVVRGRKRADIVDDLLEGATDIVPGLDLVMMDREFAPDGVKDVCETHDVHYLNPGVVRSSSDHEHQIAKLASED KDFDVIKQERLDDGPTRKAVYLPKREWEREDEDNDGTDVTIRQELIEDFKDVGNTTPLSEDRDGDSPLSNLLNEVAEEEE IDEPARVEAPTLPFETNLPWVDVDPADQQEMKHQIGRLMARYKRRWGIENGFKKLKTFLAETQSPDHRFRYFNFAFACVL YNCWRLVDILVQLELYGEIGDQPAVSSNSFLTFAKKSYGLDPPD >Mature_603_residues TFREMVDGALKTYPREQQVRHNRSVTLEDLVTEVPVTYLRFYDEYDHDQGHPKPWGAVFRAHVLRCVKGWKNATALHRYL KQQPFLCTQLGFKDIPDQSTLYRAWDDRLEDVHDAVRDAAEVVVDIARYHDIPAPEPEFLPDQPTDTVTNSKSKDTLARE KAREVWKGAKPIVEDAFHLDRSDNASIPEGAFWEQQSYLGMRTDMHPNDGAQSFAADSTRRKTPSGDSHRLQTKTLGVER IRTMLRETGRTLVARAKSKDKMGRKQMTAIDFTKGNPWSGHVERDSSGQNQEPWILGYKGDDGPFFQWAVIKLVGHDVPL ILDAVPVVRGRKRADIVDDLLEGATDIVPGLDLVMMDREFAPDGVKDVCETHDVHYLNPGVVRSSSDHEHQIAKLASEDK DFDVIKQERLDDGPTRKAVYLPKREWEREDEDNDGTDVTIRQELIEDFKDVGNTTPLSEDRDGDSPLSNLLNEVAEEEEI DEPARVEAPTLPFETNLPWVDVDPADQQEMKHQIGRLMARYKRRWGIENGFKKLKTFLAETQSPDHRFRYFNFAFACVLY NCWRLVDILVQLELYGEIGDQPAVSSNSFLTFAKKSYGLDPPD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69092; Mature: 68961
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFREMVDGALKTYPREQQVRHNRSVTLEDLVTEVPVTYLRFYDEYDHDQGHPKPWGAVF CCHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH RAHVLRCVKGWKNATALHRYLKQQPFLCTQLGFKDIPDQSTLYRAWDDRLEDVHDAVRDA HHHHHHHHHHCCHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH AEVVVDIARYHDIPAPEPEFLPDQPTDTVTNSKSKDTLAREKAREVWKGAKPIVEDAFHL HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHC DRSDNASIPEGAFWEQQSYLGMRTDMHPNDGAQSFAADSTRRKTPSGDSHRLQTKTLGVE CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHCCCHHCCCCCCCCCCHHHHHHHHH RIRTMLRETGRTLVARAKSKDKMGRKQMTAIDFTKGNPWSGHVERDSSGQNQEPWILGYK HHHHHHHHHCHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE GDDGPFFQWAVIKLVGHDVPLILDAVPVVRGRKRADIVDDLLEGATDIVPGLDLVMMDRE CCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCC FAPDGVKDVCETHDVHYLNPGVVRSSSDHEHQIAKLASEDKDFDVIKQERLDDGPTRKAV CCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEE YLPKREWEREDEDNDGTDVTIRQELIEDFKDVGNTTPLSEDRDGDSPLSNLLNEVAEEEE ECCHHHHCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH IDEPARVEAPTLPFETNLPWVDVDPADQQEMKHQIGRLMARYKRRWGIENGFKKLKTFLA CCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH ETQSPDHRFRYFNFAFACVLYNCWRLVDILVQLELYGEIGDQPAVSSNSFLTFAKKSYGL HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHCCC DPPD CCCC >Mature Secondary Structure TFREMVDGALKTYPREQQVRHNRSVTLEDLVTEVPVTYLRFYDEYDHDQGHPKPWGAVF CHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH RAHVLRCVKGWKNATALHRYLKQQPFLCTQLGFKDIPDQSTLYRAWDDRLEDVHDAVRDA HHHHHHHHHHCCHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH AEVVVDIARYHDIPAPEPEFLPDQPTDTVTNSKSKDTLAREKAREVWKGAKPIVEDAFHL HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHC DRSDNASIPEGAFWEQQSYLGMRTDMHPNDGAQSFAADSTRRKTPSGDSHRLQTKTLGVE CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHCCCHHCCCCCCCCCCHHHHHHHHH RIRTMLRETGRTLVARAKSKDKMGRKQMTAIDFTKGNPWSGHVERDSSGQNQEPWILGYK HHHHHHHHHCHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE GDDGPFFQWAVIKLVGHDVPLILDAVPVVRGRKRADIVDDLLEGATDIVPGLDLVMMDRE CCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCC FAPDGVKDVCETHDVHYLNPGVVRSSSDHEHQIAKLASEDKDFDVIKQERLDDGPTRKAV CCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEE YLPKREWEREDEDNDGTDVTIRQELIEDFKDVGNTTPLSEDRDGDSPLSNLLNEVAEEEE ECCHHHHCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH IDEPARVEAPTLPFETNLPWVDVDPADQQEMKHQIGRLMARYKRRWGIENGFKKLKTFLA CCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH ETQSPDHRFRYFNFAFACVLYNCWRLVDILVQLELYGEIGDQPAVSSNSFLTFAKKSYGL HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHCCC DPPD CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA