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Identifier: 15836040

GI number: 15836040

Start: 589655

End: 590131

Strand: Direct

Name: Not Available

Synonym: CPj0509

Alternate gene names: NA

Gene position: 589655-590131 (Clockwise)

Preceding gene: 15836039

Following gene: 15836041

Centisome position: 48.07

GC content: 38.78

Gene sequence:

>477_bases
GTGACGCAAGAAAAGATCAAAATACATGTTTCCAATGAGCAAACATGTATTCCTATTCATTTGGTTTCTGTAGAGAAGCT
GGTTCTTACGCTCTTAGAGCACTTAAAAGTAACAACTAATGAAATTTTTATCTACTTCCTAGAAGATAAAGCTCTTGCAG
AACTCCATGATAAGGTATTTGCTGATCCTTCTCTAACAGATACGATCACTCTGCCTATTGATGCTCCCGGAGATCCCGCT
TATCCTCATGTTTTAGGAGAAGCATTCATTAGCCCACAGGCCGCTCTTAGGTTTTTAGAGAACACATCCCCAAACCAAGA
GGATATCTACGAAGAAATCTCGAGATACCTCGTCCACTCTATTCTCCATATGCTCGGATACGACGACACCTCATCAGAAG
AAAAGAGAAAAATGAGAGTTAAAGAAAATCAAATCCTGTGTATGTTAAGAAAAAAACATGCTTTGCTAACAGCTTAA

Upstream 100 bases:

>100_bases
TTGGGCCGTTGGAATGATAGTACAGCGAAAAAAGTCACAGGTTTACCTAAGACCCCTATTTTAAAATAAGTTTGTTTTTC
TCTATGGGAATTTCATTCGC

Downstream 100 bases:

>100_bases
CATGCTCCATATTCTTTTAGCCATATTCTGTATTCTTCTATTCCTAGCCTTCGGGCTTACGCAACCGTCCTGTCACGGAT
CCTCAAAATTCCTAAAAACC

Product: metalloenzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MTQEKIKIHVSNEQTCIPIHLVSVEKLVLTLLEHLKVTTNEIFIYFLEDKALAELHDKVFADPSLTDTITLPIDAPGDPA
YPHVLGEAFISPQAALRFLENTSPNQEDIYEEISRYLVHSILHMLGYDDTSSEEKRKMRVKENQILCMLRKKHALLTA

Sequences:

>Translated_158_residues
MTQEKIKIHVSNEQTCIPIHLVSVEKLVLTLLEHLKVTTNEIFIYFLEDKALAELHDKVFADPSLTDTITLPIDAPGDPA
YPHVLGEAFISPQAALRFLENTSPNQEDIYEEISRYLVHSILHMLGYDDTSSEEKRKMRVKENQILCMLRKKHALLTA
>Mature_157_residues
TQEKIKIHVSNEQTCIPIHLVSVEKLVLTLLEHLKVTTNEIFIYFLEDKALAELHDKVFADPSLTDTITLPIDAPGDPAY
PHVLGEAFISPQAALRFLENTSPNQEDIYEEISRYLVHSILHMLGYDDTSSEEKRKMRVKENQILCMLRKKHALLTA

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_CHLPN (Q9Z843)

Other databases:

- EMBL:   AE001363
- EMBL:   AE002161
- EMBL:   AE009440
- EMBL:   BA000008
- PIR:   A86554
- PIR:   C72069
- RefSeq:   NP_224705.1
- RefSeq:   NP_300564.1
- RefSeq:   NP_444796.1
- RefSeq:   NP_876802.1
- ProteinModelPortal:   Q9Z843
- SMR:   Q9Z843
- GeneID:   1467209
- GeneID:   895349
- GeneID:   919257
- GeneID:   962916
- GenomeReviews:   AE001363_GR
- GenomeReviews:   AE002161_GR
- GenomeReviews:   AE009440_GR
- GenomeReviews:   BA000008_GR
- KEGG:   cpa:CP0245
- KEGG:   cpj:CPj0509
- KEGG:   cpn:CPn0509
- KEGG:   cpt:CpB0530
- TIGR:   CP_0245
- HOGENOM:   HBG402669
- OMA:   YEEISRY
- ProtClustDB:   CLSK2391191
- BioCyc:   CPNE115711:CP_0245-MONOMER
- BioCyc:   CPNE115713:CPN0509-MONOMER
- BioCyc:   CPNE138677:CPJ0509-MONOMER
- BioCyc:   CPNE182082:CPB0530-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 18067; Mature: 17936

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQEKIKIHVSNEQTCIPIHLVSVEKLVLTLLEHLKVTTNEIFIYFLEDKALAELHDKVF
CCCCEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHC
ADPSLTDTITLPIDAPGDPAYPHVLGEAFISPQAALRFLENTSPNQEDIYEEISRYLVHS
CCCCCCCEEEEEECCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
ILHMLGYDDTSSEEKRKMRVKENQILCMLRKKHALLTA
HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TQEKIKIHVSNEQTCIPIHLVSVEKLVLTLLEHLKVTTNEIFIYFLEDKALAELHDKVF
CCCEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHC
ADPSLTDTITLPIDAPGDPAYPHVLGEAFISPQAALRFLENTSPNQEDIYEEISRYLVHS
CCCCCCCEEEEEECCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
ILHMLGYDDTSSEEKRKMRVKENQILCMLRKKHALLTA
HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362