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The map label for this gene is pmp_16

Identifier: 15835998

GI number: 15835998

Start: 535952

End: 538756

Strand: Direct

Name: pmp_16

Synonym: CPj0467

Alternate gene names: 15835998

Gene position: 535952-538756 (Clockwise)

Preceding gene: 15835997

Following gene: 15835999

Centisome position: 43.7

GC content: 43.6

Gene sequence:

>2805_bases
ATGTTCGGGATGACTCCTGCAGTGTATAGTTTACAAACGGACTCCCTTGAAAAGTTTGCTTTAGAGAGGGATGAAGAGTT
TCGTACGAGCTTTCCTCTCTTAGACTCTCTCTCCACTCTTACAGGATTTTCTCCAATAACTACGTTTGTTGGAAATAGAC
ATAATTCCTCTCAAGACATTGTACTTTCTAACTACAAGTCTATTGATAACATCCTTCTTCTTTGGACATCGGCTGGGGGA
GCTGTGTCCTGTAATAATTTCTTATTATCAAATGTTGAAGACCATGCCTTCTTCAGTAAAAATCTCGCGATTGGGACTGC
AGGCGCGATTGCTTGCCAGGGAGCCTGCACAATCACGAAGAATAGAGGACCCCTTATTTTTTTCAGCAATCGAGGTCTTA
ACAATGCGAGTACAGGAGGAGAAACTCGTGGGGGTGCGATTGCCTGTAATGGAGACTTCACGATTTCTCAAAATCAAGGG
ACTTTCTACTTTGTCAACAATTCCGTCAACAACTGGGGAGGAGCCCTCTCCACCAATGGACACTGCCGCATCCAAAGCAA
CAGGGCACCTCTACTCTTTTTTAACAATACAGCCCCTAGTGGAGGGGGTGCGCTTCGTAGTGAAAATACAACGATCTCTG
ATAACACGCGTCCTATTTATTTTAAGAACAACTGTGGGAACAATGGCGGGGCCATTCAAACAAGCGTTACTGTTGCGATA
AAAAATAACTCCGGGTCGGTGATTTTCAATAACAACACAGCGTTATCTGGTTCGATAAATTCAGGAAATGGTTCAGGAGG
GGCGATTTATACAACAAACCTATCCATAGACGATAACCCTGGAACTATTCTTTTCAATAATAACTACTGCATTCGCGATG
GCGGAGCTATCTGTACACAATTTTTGACAATCAAAAATAGTGGCCACGTATATTTCACCAACAATCAAGGAAACTGGGGA
GGTGCTCTTATGCTCCTACAGGACAGCACCTGCCTACTCTTCGCGGAACAAGGAAATATCGCATTTCAAAATAATGAGGT
TTTCCTCACCACATTTGGTAGATACAACGCCATACATTGTACACCAAATAGCAACTTACAACTTGGAGCTAATAAGGGGT
ATACGACTGCTTTTTTTGATCCTATAGAACACCAACATCCAACTACAAATCCTCTAATCTTTAATCCCAATGCGAACCAT
CAGGGAACGATCTTATTTTCTTCAGCCTATATCCCAGAAGCTTCTGACTACGAAAATAATTTCATTAGCAGCTCGAAAAA
TACCTCTGAACTTCGCAATGGTGTCCTCTCTATCGAGGATCGTGCGGGATGGCAATTCTATAAGTTCACTCAAAAAGGAG
GTATCCTTAAATTAGGGCATGCGGCGAGTATTGCAACAACTGCCAACTCTGAGACTCCATCAACTAGTGTAGGCTCCCAG
GTCATCATTAATAACCTTGCGATTAACCTCCCCTCGATCTTAGCAAAAGGAAAAGCTCCTACCTTGTGGATCCGTCCTCT
ACAATCTAGTGCTCCTTTCACAGAGGACAATAACCCTACAATTACTTTATCAGGTCCTCTGACACTCTTAAATGAGGAAA
ACCGCGATCCCTACGACAGTATAGATCTCTCTGAGCCTTTACAAAACATTCATCTTCTTTCTTTATCGGATGTAACAGCA
CGTCATATCAATACCGATAACTTTCATCCTGAAAGCTTAAATGCGACTGAGCATTACGGTTATCAAGGCATCTGGTCTCC
TTATTGGGTAGAGACGATAACAACAACAAATAACGCTTCTATAGAGACGGCAAACACCCTCTACAGAGCTCTGTATGCCA
ATTGGACTCCCTTAGGATATAAGGTCAATCCTGAATACCAAGGAGATCTTGCTACGACTCCCCTATGGCAATCCTTTCAT
ACTATGTTCTCTCTATTAAGAAGTTATAATCGAACTGGTGATTCTGATATCGAGAGGCCTTTCTTAGAAATTCAAGGGAT
TGCCGACGGCCTCTTTGTTCATCAAAATAGCATCCCCGGGGCTCCAGGATTCCGTATCCAATCTACAGGGTATTCCTTAC
AAGCATCCTCCGAAACTTCTTTACATCAGAAAATCTCCTTAGGTTTTGCACAGTTCTTCACCCGCACTAAAGAAATCGGA
TCAAGCAACAACGTCTCGGCTCACAATACAGTCTCTTCACTTTATGTTGAGCTTCCGTGGTTCCAAGAGGCCTTTGCAAC
ATCCACAGTGTTAGCGTATGGCTATGGGGACCATCACCTCCACAGCCTACATCCCTCACATCAAGAACAGGCAGAAGGGA
CGTGTTATAGCCATACATTAGCAGCAGCTATCGGCTGTTCTTTCCCTTGGCAACAGAAATCCTATCTTCACCTCAGCCCG
TTCGTTCAGGCAATTGCAATACGTTCTCACCAAACAGCGTTCGAAGAGATTGGTGACAATCCCCGAAAGTTTGTCTCTCA
AAAGCCTTTCTATAATCTGACCTTACCTCTAGGAATCCAAGGAAAATGGCAGTCAAAATTCCACGTACCTACAGAATGGA
CTCTAGAACTTTCTTACCAACCGGTACTCTATCAACAAAATCCCCAAATCGGTGTCACGCTACTTGCGAGCGGAGGTTCC
TGGGATATCCTAGGCCATAACTATGTTCGCAATGCTTTAGGGTACAAAGTCCACAATCAAACTGCGCTCTTCCGTTCTCT
CGATCTATTCTTGGATTACCAAGGATCGGTCTCCTCCTCGACATCTACGCACCATCTCCAAGCAGGAAGTACCTTAAAAT
TCTAA

Upstream 100 bases:

>100_bases
GATTTTAACAATAAGTGACCAAAACAGAAAGATTAAGGAACCTCTAGTGTCAAAGACTCCTCCTAAGTTTTTATTCTATC
TCGGGAATTTCACAGCCTGC

Downstream 100 bases:

>100_bases
AATAAAAGAACGATAAAATTGAAATCTTTAGAATTAACAACTATCCGATGAGCTACGTTAGCCCAATCGGTAGAGGACTC
CCTCAAAATTTAAATATAGA

Product: hypothetical protein

Products: NA

Alternate protein names: Polymorphic membrane protein 16 [H]

Number of amino acids: Translated: 934; Mature: 934

Protein sequence:

>934_residues
MFGMTPAVYSLQTDSLEKFALERDEEFRTSFPLLDSLSTLTGFSPITTFVGNRHNSSQDIVLSNYKSIDNILLLWTSAGG
AVSCNNFLLSNVEDHAFFSKNLAIGTAGAIACQGACTITKNRGPLIFFSNRGLNNASTGGETRGGAIACNGDFTISQNQG
TFYFVNNSVNNWGGALSTNGHCRIQSNRAPLLFFNNTAPSGGGALRSENTTISDNTRPIYFKNNCGNNGGAIQTSVTVAI
KNNSGSVIFNNNTALSGSINSGNGSGGAIYTTNLSIDDNPGTILFNNNYCIRDGGAICTQFLTIKNSGHVYFTNNQGNWG
GALMLLQDSTCLLFAEQGNIAFQNNEVFLTTFGRYNAIHCTPNSNLQLGANKGYTTAFFDPIEHQHPTTNPLIFNPNANH
QGTILFSSAYIPEASDYENNFISSSKNTSELRNGVLSIEDRAGWQFYKFTQKGGILKLGHAASIATTANSETPSTSVGSQ
VIINNLAINLPSILAKGKAPTLWIRPLQSSAPFTEDNNPTITLSGPLTLLNEENRDPYDSIDLSEPLQNIHLLSLSDVTA
RHINTDNFHPESLNATEHYGYQGIWSPYWVETITTTNNASIETANTLYRALYANWTPLGYKVNPEYQGDLATTPLWQSFH
TMFSLLRSYNRTGDSDIERPFLEIQGIADGLFVHQNSIPGAPGFRIQSTGYSLQASSETSLHQKISLGFAQFFTRTKEIG
SSNNVSAHNTVSSLYVELPWFQEAFATSTVLAYGYGDHHLHSLHPSHQEQAEGTCYSHTLAAAIGCSFPWQQKSYLHLSP
FVQAIAIRSHQTAFEEIGDNPRKFVSQKPFYNLTLPLGIQGKWQSKFHVPTEWTLELSYQPVLYQQNPQIGVTLLASGGS
WDILGHNYVRNALGYKVHNQTALFRSLDLFLDYQGSVSSSTSTHHLQAGSTLKF

Sequences:

>Translated_934_residues
MFGMTPAVYSLQTDSLEKFALERDEEFRTSFPLLDSLSTLTGFSPITTFVGNRHNSSQDIVLSNYKSIDNILLLWTSAGG
AVSCNNFLLSNVEDHAFFSKNLAIGTAGAIACQGACTITKNRGPLIFFSNRGLNNASTGGETRGGAIACNGDFTISQNQG
TFYFVNNSVNNWGGALSTNGHCRIQSNRAPLLFFNNTAPSGGGALRSENTTISDNTRPIYFKNNCGNNGGAIQTSVTVAI
KNNSGSVIFNNNTALSGSINSGNGSGGAIYTTNLSIDDNPGTILFNNNYCIRDGGAICTQFLTIKNSGHVYFTNNQGNWG
GALMLLQDSTCLLFAEQGNIAFQNNEVFLTTFGRYNAIHCTPNSNLQLGANKGYTTAFFDPIEHQHPTTNPLIFNPNANH
QGTILFSSAYIPEASDYENNFISSSKNTSELRNGVLSIEDRAGWQFYKFTQKGGILKLGHAASIATTANSETPSTSVGSQ
VIINNLAINLPSILAKGKAPTLWIRPLQSSAPFTEDNNPTITLSGPLTLLNEENRDPYDSIDLSEPLQNIHLLSLSDVTA
RHINTDNFHPESLNATEHYGYQGIWSPYWVETITTTNNASIETANTLYRALYANWTPLGYKVNPEYQGDLATTPLWQSFH
TMFSLLRSYNRTGDSDIERPFLEIQGIADGLFVHQNSIPGAPGFRIQSTGYSLQASSETSLHQKISLGFAQFFTRTKEIG
SSNNVSAHNTVSSLYVELPWFQEAFATSTVLAYGYGDHHLHSLHPSHQEQAEGTCYSHTLAAAIGCSFPWQQKSYLHLSP
FVQAIAIRSHQTAFEEIGDNPRKFVSQKPFYNLTLPLGIQGKWQSKFHVPTEWTLELSYQPVLYQQNPQIGVTLLASGGS
WDILGHNYVRNALGYKVHNQTALFRSLDLFLDYQGSVSSSTSTHHLQAGSTLKF
>Mature_934_residues
MFGMTPAVYSLQTDSLEKFALERDEEFRTSFPLLDSLSTLTGFSPITTFVGNRHNSSQDIVLSNYKSIDNILLLWTSAGG
AVSCNNFLLSNVEDHAFFSKNLAIGTAGAIACQGACTITKNRGPLIFFSNRGLNNASTGGETRGGAIACNGDFTISQNQG
TFYFVNNSVNNWGGALSTNGHCRIQSNRAPLLFFNNTAPSGGGALRSENTTISDNTRPIYFKNNCGNNGGAIQTSVTVAI
KNNSGSVIFNNNTALSGSINSGNGSGGAIYTTNLSIDDNPGTILFNNNYCIRDGGAICTQFLTIKNSGHVYFTNNQGNWG
GALMLLQDSTCLLFAEQGNIAFQNNEVFLTTFGRYNAIHCTPNSNLQLGANKGYTTAFFDPIEHQHPTTNPLIFNPNANH
QGTILFSSAYIPEASDYENNFISSSKNTSELRNGVLSIEDRAGWQFYKFTQKGGILKLGHAASIATTANSETPSTSVGSQ
VIINNLAINLPSILAKGKAPTLWIRPLQSSAPFTEDNNPTITLSGPLTLLNEENRDPYDSIDLSEPLQNIHLLSLSDVTA
RHINTDNFHPESLNATEHYGYQGIWSPYWVETITTTNNASIETANTLYRALYANWTPLGYKVNPEYQGDLATTPLWQSFH
TMFSLLRSYNRTGDSDIERPFLEIQGIADGLFVHQNSIPGAPGFRIQSTGYSLQASSETSLHQKISLGFAQFFTRTKEIG
SSNNVSAHNTVSSLYVELPWFQEAFATSTVLAYGYGDHHLHSLHPSHQEQAEGTCYSHTLAAAIGCSFPWQQKSYLHLSP
FVQAIAIRSHQTAFEEIGDNPRKFVSQKPFYNLTLPLGIQGKWQSKFHVPTEWTLELSYQPVLYQQNPQIGVTLLASGGS
WDILGHNYVRNALGYKVHNQTALFRSLDLFLDYQGSVSSSTSTHHLQAGSTLKF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted, cell wall. Cell outer membrane; Peripheral membrane protein; Extracellular side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005546
- InterPro:   IPR003368
- InterPro:   IPR011427 [H]

Pfam domain/function: PF03797 Autotransporter; PF07548 ChlamPMP_M [H]

EC number: NA

Molecular weight: Translated: 102164; Mature: 102164

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGMTPAVYSLQTDSLEKFALERDEEFRTSFPLLDSLSTLTGFSPITTFVGNRHNSSQDI
CCCCCCCEEEECCCCHHHHHHCCCHHHHHCCCHHHHHHHHCCCCHHHHHHCCCCCCCCCE
VLSNYKSIDNILLLWTSAGGAVSCNNFLLSNVEDHAFFSKNLAIGTAGAIACQGACTITK
EEECCCCCCEEEEEEECCCCEEEECCHHHCCCCHHHEEECCCEEECCCCEEECCEEEEEC
NRGPLIFFSNRGLNNASTGGETRGGAIACNGDFTISQNQGTFYFVNNSVNNWGGALSTNG
CCCCEEEEECCCCCCCCCCCCCCCCEEEECCCEEEECCCCEEEEEECCCCCCCCCCCCCC
HCRIQSNRAPLLFFNNTAPSGGGALRSENTTISDNTRPIYFKNNCGNNGGAIQTSVTVAI
EEEEECCCCCEEEECCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCEEEEEEEEEE
KNNSGSVIFNNNTALSGSINSGNGSGGAIYTTNLSIDDNPGTILFNNNYCIRDGGAICTQ
ECCCCCEEECCCEEEEEECCCCCCCCCEEEEEEEEECCCCCEEEECCCEEEECCCCEEEE
FLTIKNSGHVYFTNNQGNWGGALMLLQDSTCLLFAEQGNIAFQNNEVFLTTFGRYNAIHC
EEEEECCCEEEEECCCCCCCEEEEEEECCEEEEEEECCCEEEECCEEEEEECCCCCEEEE
TPNSNLQLGANKGYTTAFFDPIEHQHPTTNPLIFNPNANHQGTILFSSAYIPEASDYENN
CCCCCEEECCCCCEEEEEECCHHCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCC
FISSSKNTSELRNGVLSIEDRAGWQFYKFTQKGGILKLGHAASIATTANSETPSTSVGSQ
CCCCCCCHHHHHCCEEEEECCCCCEEEEEECCCCEEEECCCEEEEECCCCCCCCCCCCCE
VIINNLAINLPSILAKGKAPTLWIRPLQSSAPFTEDNNPTITLSGPLTLLNEENRDPYDS
EEEEHEEECCHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEECCEEEEECCCCCCCCC
IDLSEPLQNIHLLSLSDVTARHINTDNFHPESLNATEHYGYQGIWSPYWVETITTTNNAS
CCHHHHHHHEEEEEECCCHHHHCCCCCCCCCCCCCHHHCCCCCCCCCEEEEEEEECCCCC
IETANTLYRALYANWTPLGYKVNPEYQGDLATTPLWQSFHTMFSLLRSYNRTGDSDIERP
EEHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCC
FLEIQGIADGLFVHQNSIPGAPGFRIQSTGYSLQASSETSLHQKISLGFAQFFTRTKEIG
EEEEEECCCEEEEECCCCCCCCCCEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCC
SSNNVSAHNTVSSLYVELPWFQEAFATSTVLAYGYGDHHLHSLHPSHQEQAEGTCYSHTL
CCCCCCHHCCEEEEEEECCCHHHHHHCCEEEEECCCCCCEECCCCCCHHHCCCCCHHHHH
AAAIGCSFPWQQKSYLHLSPFVQAIAIRSHQTAFEEIGDNPRKFVSQKPFYNLTLPLGIQ
HHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEEECCC
GKWQSKFHVPTEWTLELSYQPVLYQQNPQIGVTLLASGGSWDILGHNYVRNALGYKVHNQ
CCCCCEEECCCEEEEEEECCEEEEECCCCEEEEEEECCCCEEECCHHHHHHHHCEEECCC
TALFRSLDLFLDYQGSVSSSTSTHHLQAGSTLKF
HHHEEEEEEEEEECCCCCCCCCCEEEECCCCCCC
>Mature Secondary Structure
MFGMTPAVYSLQTDSLEKFALERDEEFRTSFPLLDSLSTLTGFSPITTFVGNRHNSSQDI
CCCCCCCEEEECCCCHHHHHHCCCHHHHHCCCHHHHHHHHCCCCHHHHHHCCCCCCCCCE
VLSNYKSIDNILLLWTSAGGAVSCNNFLLSNVEDHAFFSKNLAIGTAGAIACQGACTITK
EEECCCCCCEEEEEEECCCCEEEECCHHHCCCCHHHEEECCCEEECCCCEEECCEEEEEC
NRGPLIFFSNRGLNNASTGGETRGGAIACNGDFTISQNQGTFYFVNNSVNNWGGALSTNG
CCCCEEEEECCCCCCCCCCCCCCCCEEEECCCEEEECCCCEEEEEECCCCCCCCCCCCCC
HCRIQSNRAPLLFFNNTAPSGGGALRSENTTISDNTRPIYFKNNCGNNGGAIQTSVTVAI
EEEEECCCCCEEEECCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCEEEEEEEEEE
KNNSGSVIFNNNTALSGSINSGNGSGGAIYTTNLSIDDNPGTILFNNNYCIRDGGAICTQ
ECCCCCEEECCCEEEEEECCCCCCCCCEEEEEEEEECCCCCEEEECCCEEEECCCCEEEE
FLTIKNSGHVYFTNNQGNWGGALMLLQDSTCLLFAEQGNIAFQNNEVFLTTFGRYNAIHC
EEEEECCCEEEEECCCCCCCEEEEEEECCEEEEEEECCCEEEECCEEEEEECCCCCEEEE
TPNSNLQLGANKGYTTAFFDPIEHQHPTTNPLIFNPNANHQGTILFSSAYIPEASDYENN
CCCCCEEECCCCCEEEEEECCHHCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCC
FISSSKNTSELRNGVLSIEDRAGWQFYKFTQKGGILKLGHAASIATTANSETPSTSVGSQ
CCCCCCCHHHHHCCEEEEECCCCCEEEEEECCCCEEEECCCEEEEECCCCCCCCCCCCCE
VIINNLAINLPSILAKGKAPTLWIRPLQSSAPFTEDNNPTITLSGPLTLLNEENRDPYDS
EEEEHEEECCHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEECCEEEEECCCCCCCCC
IDLSEPLQNIHLLSLSDVTARHINTDNFHPESLNATEHYGYQGIWSPYWVETITTTNNAS
CCHHHHHHHEEEEEECCCHHHHCCCCCCCCCCCCCHHHCCCCCCCCCEEEEEEEECCCCC
IETANTLYRALYANWTPLGYKVNPEYQGDLATTPLWQSFHTMFSLLRSYNRTGDSDIERP
EEHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCC
FLEIQGIADGLFVHQNSIPGAPGFRIQSTGYSLQASSETSLHQKISLGFAQFFTRTKEIG
EEEEEECCCEEEEECCCCCCCCCCEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCC
SSNNVSAHNTVSSLYVELPWFQEAFATSTVLAYGYGDHHLHSLHPSHQEQAEGTCYSHTL
CCCCCCHHCCEEEEEEECCCHHHHHHCCEEEEECCCCCCEECCCCCCHHHCCCCCHHHHH
AAAIGCSFPWQQKSYLHLSPFVQAIAIRSHQTAFEEIGDNPRKFVSQKPFYNLTLPLGIQ
HHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEEECCC
GKWQSKFHVPTEWTLELSYQPVLYQQNPQIGVTLLASGGSWDILGHNYVRNALGYKVHNQ
CCCCCEEECCCEEEEEEECCEEEEECCCCEEEEEEECCCCEEECCHHHHHHHHCEEECCC
TALFRSLDLFLDYQGSVSSSTSTHHLQAGSTLKF
HHHEEEEEEEEEECCCCCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362 [H]