| Definition | Chlamydophila pneumoniae J138, complete genome. |
|---|---|
| Accession | NC_002491 |
| Length | 1,226,565 |
Click here to switch to the map view.
The map label for this gene is pmp_8
Identifier: 15835979
GI number: 15835979
Start: 496943
End: 499735
Strand: Direct
Name: pmp_8
Synonym: CPj0446
Alternate gene names: 15835979
Gene position: 496943-499735 (Clockwise)
Preceding gene: 15835978
Following gene: 15835980
Centisome position: 40.52
GC content: 44.72
Gene sequence:
>2793_bases ATGAAAATACCCTTGCACAAACTCCTGATCTCTTCGACTCTTGTCACTCCCATTCTATTGAGCATTGCAACTTACGGAGC AGATGCTTCTTTATCCCCTACAGATAGCTTTGATGGAGCGGGCGGCTCTACATTTACTCCAAAATCTACAGCAGATGCCA ATGGAACGAACTATGTCTTATCAGGAAATGTCTATATAAACGATGCTGGGAAAGGCACAGCATTAACAGGCTGCTGCTTT ACAGAAACTACGGGTGATCTGACATTTACTGGAAAGGGATACTCATTTTCATTCAACACGGTAGATGCGGGTTCGAATGC AGGAGCTGCGGCAAGCACAACTGCTGATAAAGCCCTAACATTCACAGGATTTTCTAACCTTTCCTTCATTGCAGCTCCTG GAACTACAGTTGCTTCAGGAAAAAGTACTTTAAGTTCTGCAGGAGCCTTAAATCTTACCGATAATGGAACGATTCTCTTT AGCCAAAACGTCTCCAATGAAGCTAATAACAATGGCGGAGCGATCACCGCAAAAACTCTTTCTATTTCTGGGAATACCTC TTCTATAACCTTCACTAGTAATAGCGCAAAAAAATTAGGTGGAGCGATCTATAGCTCTGCGGCTGCAAGTATTTCAGGAA ACACCGGCCAGTTAGTCTTTATGAATAATAAAGGAGAAACTGGGGGTGGGGCTCTGGGCTTTGAAGCCAGCTCCTCGATT ACTCAAAATAGCTCCCTTTTCTTCTCTGGAAACACTGCAACAGATGCTGCAGGCAAGGGCGGGGCCATTTATTGTGAAAA AACAGGAGAGACTCCTACTCTTACTATCTCTGGAAATAAAAGTCTGACCTTCGCCGAGAACTCTTCAGTAACTCAAGGCG GAGCAATCTGTGCCCATGGTCTAGATCTTTCCGCTGCTGGCCCTACCCTATTTTCAAATAATAGATGCGGGAACACAGCT GCAGGCAAGGGCGGCGCTATTGCAATTGCCGACTCTGGATCTTTAAGTCTCTCTGCAAATCAAGGAGACATCACGTTCCT TGGCAATACTCTAACCTCAACCTCCGCGCCAACATCGACACGGAATGCTATCTACCTGGGATCGTCAGCAAAAATTACGA ACTTAAGGGCAGCCCAAGGCCAATCTATCTATTTCTATGATCCGATTGCATCTAACACCACAGGAGCTTCAGACGTTCTG ACCATCAACCAACCGGATAGCAACTCGCCTTTAGATTATTCAGGAACGATTGTATTTTCTGGGGAAAAGCTCTCTGCAGA TGAAGCGAAAGCTGCTGATAACTTCACATCTATATTAAAGCAACCATTGGCTCTAGCCTCTGGAACCTTAGCACTCAAAG GAAATGTCGAGTTAGATGTCAATGGTTTCACACAGACTGAAGGCTCTACACTCCTCATGCAACCAGGAACAAAGCTCAAA GCAGATACTGAAGCTATCAGTCTTACCAAACTTGTCGTTGATCTTTCTGCCTTAGAGGGAAATAAGAGTGTGTCCATTGA AACAGCAGGAGCCAACAAAACTATAACTCTAACCTCTCCTCTTGTTTTCCAAGATAGTAGCGGCAATTTTTATGAAAGCC ATACGATAAACCAAGCCTTCACGCAGCCTTTGGTGGTATTCACTGCTGCTACTGCTGCTAGCGATATTTATATCGATGCG CTTCTCACTTCTCCAGTACAAACTCCAGAACCTCATTACGGGTATCAGGGACATTGGGAAGCCACTTGGGCAGACACATC AACTGCAAAATCAGGAACTATGACTTGGGTAACTACGGGCTACAACCCTAATCCTGAGCGTAGAGCTTCCGTAGTTCCCG ATTCATTATGGGCATCCTTTACTGACATTCGCACTCTACAGCAGATCATGACATCTCAAGCGAATAGTATCTATCAGCAA CGAGGACTCTGGGCATCAGGAACTGCGAATTTCTTCCATAAGGATAAATCAGGAACTAACCAAGCATTCCGACATAAAAG CTACGGCTATATTGTTGGAGGAAGTGCTGAAGATTTTTCTGAAAATATCTTCAGTGTAGCTTTCTGCCAGCTCTTCGGTA AAGATAAAGACCTGTTTATAGTTGAAAATACCTCTCATAACTATTTAGCGTCGCTATACCTGCAACATCGAGCATTCCTA GGAGGACTTCCCATGCCCTCATTTGGAAGTATCACCGACATGCTGAAAGATATTCCTCTCATTTTGAATGCCCAGCTAAG CTACAGCTACACTAAAAATGATATGGATACTCGCTATACTTCCTATCCTGAAGCTCAAGGCTCTTGGACCAATAACTCTG GGGCTCTAGAGCTCGGAGGATCTCTGGCTCTATATCTCCCTAAAGAAGCACCGTTCTTCCAGGGATATTTCCCCTTCTTA AAGTTCCAGGCAGTCTACAGCCGCCAACAAAACTTTAAAGAGAGTGGCGCTGAAGCCCGTGCTTTTGATGATGGAGACCT AGTGAACTGCTCTATCCCTGTCGGCATTCGGTTAGAAAAAATCTCCGAAGATGAAAAAAATAATTTCGAGATTTCTCTAG CCTACATTGGTGATGTGTATCGTAAAAATCCCCGTTCGCGTACTTCTCTAATGGTCAGTGGAGCCTCTTGGACTTCGCTA TGTAAAAACCTCGCACGACAAGCCTTCTTAGCAAGTGCTGGAAGCCATCTGACTCTCTCCCCTCATGTAGAACTCTCTGG GGAAGCTGCTTATGAGCTTCGTGGCTCAGCACACATCTACAATGTAGATTGTGGGCTAAGATACTCATTCTAG
Upstream 100 bases:
>100_bases GTACGAAGTTCTTCACGAAATTATAATACAAACCTAGGCTCTAAGTTTTGTTTCTAGATTATCGAAAACGTGTTAATTAA TTGAACCCAAGCATCTTTCT
Downstream 100 bases:
>100_bases TTCCTACTTTCCTCCCTAAACTTTTAGGGAGGAATTCTTATAAAAACCCTGTAGATTCTTAACTTACTAGTCTCTCCTTT CCTCTTGCTTTCTTTAATTT
Product: hypothetical protein
Products: NA
Alternate protein names: Outer membrane protein 11; Polymorphic membrane protein 8 [H]
Number of amino acids: Translated: 930; Mature: 930
Protein sequence:
>930_residues MKIPLHKLLISSTLVTPILLSIATYGADASLSPTDSFDGAGGSTFTPKSTADANGTNYVLSGNVYINDAGKGTALTGCCF TETTGDLTFTGKGYSFSFNTVDAGSNAGAAASTTADKALTFTGFSNLSFIAAPGTTVASGKSTLSSAGALNLTDNGTILF SQNVSNEANNNGGAITAKTLSISGNTSSITFTSNSAKKLGGAIYSSAAASISGNTGQLVFMNNKGETGGGALGFEASSSI TQNSSLFFSGNTATDAAGKGGAIYCEKTGETPTLTISGNKSLTFAENSSVTQGGAICAHGLDLSAAGPTLFSNNRCGNTA AGKGGAIAIADSGSLSLSANQGDITFLGNTLTSTSAPTSTRNAIYLGSSAKITNLRAAQGQSIYFYDPIASNTTGASDVL TINQPDSNSPLDYSGTIVFSGEKLSADEAKAADNFTSILKQPLALASGTLALKGNVELDVNGFTQTEGSTLLMQPGTKLK ADTEAISLTKLVVDLSALEGNKSVSIETAGANKTITLTSPLVFQDSSGNFYESHTINQAFTQPLVVFTAATAASDIYIDA LLTSPVQTPEPHYGYQGHWEATWADTSTAKSGTMTWVTTGYNPNPERRASVVPDSLWASFTDIRTLQQIMTSQANSIYQQ RGLWASGTANFFHKDKSGTNQAFRHKSYGYIVGGSAEDFSENIFSVAFCQLFGKDKDLFIVENTSHNYLASLYLQHRAFL GGLPMPSFGSITDMLKDIPLILNAQLSYSYTKNDMDTRYTSYPEAQGSWTNNSGALELGGSLALYLPKEAPFFQGYFPFL KFQAVYSRQQNFKESGAEARAFDDGDLVNCSIPVGIRLEKISEDEKNNFEISLAYIGDVYRKNPRSRTSLMVSGASWTSL CKNLARQAFLASAGSHLTLSPHVELSGEAAYELRGSAHIYNVDCGLRYSF
Sequences:
>Translated_930_residues MKIPLHKLLISSTLVTPILLSIATYGADASLSPTDSFDGAGGSTFTPKSTADANGTNYVLSGNVYINDAGKGTALTGCCF TETTGDLTFTGKGYSFSFNTVDAGSNAGAAASTTADKALTFTGFSNLSFIAAPGTTVASGKSTLSSAGALNLTDNGTILF SQNVSNEANNNGGAITAKTLSISGNTSSITFTSNSAKKLGGAIYSSAAASISGNTGQLVFMNNKGETGGGALGFEASSSI TQNSSLFFSGNTATDAAGKGGAIYCEKTGETPTLTISGNKSLTFAENSSVTQGGAICAHGLDLSAAGPTLFSNNRCGNTA AGKGGAIAIADSGSLSLSANQGDITFLGNTLTSTSAPTSTRNAIYLGSSAKITNLRAAQGQSIYFYDPIASNTTGASDVL TINQPDSNSPLDYSGTIVFSGEKLSADEAKAADNFTSILKQPLALASGTLALKGNVELDVNGFTQTEGSTLLMQPGTKLK ADTEAISLTKLVVDLSALEGNKSVSIETAGANKTITLTSPLVFQDSSGNFYESHTINQAFTQPLVVFTAATAASDIYIDA LLTSPVQTPEPHYGYQGHWEATWADTSTAKSGTMTWVTTGYNPNPERRASVVPDSLWASFTDIRTLQQIMTSQANSIYQQ RGLWASGTANFFHKDKSGTNQAFRHKSYGYIVGGSAEDFSENIFSVAFCQLFGKDKDLFIVENTSHNYLASLYLQHRAFL GGLPMPSFGSITDMLKDIPLILNAQLSYSYTKNDMDTRYTSYPEAQGSWTNNSGALELGGSLALYLPKEAPFFQGYFPFL KFQAVYSRQQNFKESGAEARAFDDGDLVNCSIPVGIRLEKISEDEKNNFEISLAYIGDVYRKNPRSRTSLMVSGASWTSL CKNLARQAFLASAGSHLTLSPHVELSGEAAYELRGSAHIYNVDCGLRYSF >Mature_930_residues MKIPLHKLLISSTLVTPILLSIATYGADASLSPTDSFDGAGGSTFTPKSTADANGTNYVLSGNVYINDAGKGTALTGCCF TETTGDLTFTGKGYSFSFNTVDAGSNAGAAASTTADKALTFTGFSNLSFIAAPGTTVASGKSTLSSAGALNLTDNGTILF SQNVSNEANNNGGAITAKTLSISGNTSSITFTSNSAKKLGGAIYSSAAASISGNTGQLVFMNNKGETGGGALGFEASSSI TQNSSLFFSGNTATDAAGKGGAIYCEKTGETPTLTISGNKSLTFAENSSVTQGGAICAHGLDLSAAGPTLFSNNRCGNTA AGKGGAIAIADSGSLSLSANQGDITFLGNTLTSTSAPTSTRNAIYLGSSAKITNLRAAQGQSIYFYDPIASNTTGASDVL TINQPDSNSPLDYSGTIVFSGEKLSADEAKAADNFTSILKQPLALASGTLALKGNVELDVNGFTQTEGSTLLMQPGTKLK ADTEAISLTKLVVDLSALEGNKSVSIETAGANKTITLTSPLVFQDSSGNFYESHTINQAFTQPLVVFTAATAASDIYIDA LLTSPVQTPEPHYGYQGHWEATWADTSTAKSGTMTWVTTGYNPNPERRASVVPDSLWASFTDIRTLQQIMTSQANSIYQQ RGLWASGTANFFHKDKSGTNQAFRHKSYGYIVGGSAEDFSENIFSVAFCQLFGKDKDLFIVENTSHNYLASLYLQHRAFL GGLPMPSFGSITDMLKDIPLILNAQLSYSYTKNDMDTRYTSYPEAQGSWTNNSGALELGGSLALYLPKEAPFFQGYFPFL KFQAVYSRQQNFKESGAEARAFDDGDLVNCSIPVGIRLEKISEDEKNNFEISLAYIGDVYRKNPRSRTSLMVSGASWTSL CKNLARQAFLASAGSHLTLSPHVELSGEAAYELRGSAHIYNVDCGLRYSF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted, cell wall. Cell outer membrane; Peripheral membrane protein; Extracellular side (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005546 - InterPro: IPR003368 - InterPro: IPR006315 - InterPro: IPR011427 [H]
Pfam domain/function: PF03797 Autotransporter; PF02415 Chlam_PMP; PF07548 ChlamPMP_M [H]
EC number: NA
Molecular weight: Translated: 97641; Mature: 97641
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIPLHKLLISSTLVTPILLSIATYGADASLSPTDSFDGAGGSTFTPKSTADANGTNYVL CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE SGNVYINDAGKGTALTGCCFTETTGDLTFTGKGYSFSFNTVDAGSNAGAAASTTADKALT ECCEEEECCCCCCEEEEEEEECCCCCEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEE FTGFSNLSFIAAPGTTVASGKSTLSSAGALNLTDNGTILFSQNVSNEANNNGGAITAKTL EECCCCCEEEECCCCEEECCCHHHHCCCEEEECCCCEEEEECCCCCCCCCCCCEEEEEEE SISGNTSSITFTSNSAKKLGGAIYSSAAASISGNTGQLVFMNNKGETGGGALGFEASSSI EECCCCCEEEEECCCHHHHHHHHHHCCHHCCCCCCCEEEEECCCCCCCCCEECCCCCCCC TQNSSLFFSGNTATDAAGKGGAIYCEKTGETPTLTISGNKSLTFAENSSVTQGGAICAHG CCCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEECCCEEEEECCCCCCCCCEEEEEC LDLSAAGPTLFSNNRCGNTAAGKGGAIAIADSGSLSLSANQGDITFLGNTLTSTSAPTST CCCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCEEEECCCCCEEEEECCCCCCCCCCCC RNAIYLGSSAKITNLRAAQGQSIYFYDPIASNTTGASDVLTINQPDSNSPLDYSGTIVFS CCEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEC GEKLSADEAKAADNFTSILKQPLALASGTLALKGNVELDVNGFTQTEGSTLLMQPGTKLK CCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCCCCCCCEEEECCCCCCC ADTEAISLTKLVVDLSALEGNKSVSIETAGANKTITLTSPLVFQDSSGNFYESHTINQAF CCCHHHHHEEEEEEHHHCCCCCEEEEEECCCCEEEEEECCEEEECCCCCEEECCCCHHHH TQPLVVFTAATAASDIYIDALLTSPVQTPEPHYGYQGHWEATWADTSTAKSGTMTWVTTG CCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECC YNPNPERRASVVPDSLWASFTDIRTLQQIMTSQANSIYQQRGLWASGTANFFHKDKSGTN CCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCC QAFRHKSYGYIVGGSAEDFSENIFSVAFCQLFGKDKDLFIVENTSHNYLASLYLQHRAFL HHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHH GGLPMPSFGSITDMLKDIPLILNAQLSYSYTKNDMDTRYTSYPEAQGSWTNNSGALELGG CCCCCCCCCCHHHHHHCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECC SLALYLPKEAPFFQGYFPFLKFQAVYSRQQNFKESGAEARAFDDGDLVNCSIPVGIRLEK EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCEEEEE ISEDEKNNFEISLAYIGDVYRKNPRSRTSLMVSGASWTSLCKNLARQAFLASAGSHLTLS CCCCCCCCEEEEEEEECHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEC PHVELSGEAAYELRGSAHIYNVDCGLRYSF CCEEECCCEEEEECCCEEEEEECCCEEECC >Mature Secondary Structure MKIPLHKLLISSTLVTPILLSIATYGADASLSPTDSFDGAGGSTFTPKSTADANGTNYVL CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE SGNVYINDAGKGTALTGCCFTETTGDLTFTGKGYSFSFNTVDAGSNAGAAASTTADKALT ECCEEEECCCCCCEEEEEEEECCCCCEEEECCCEEEEEEEECCCCCCCCCCCCCCCCEEE FTGFSNLSFIAAPGTTVASGKSTLSSAGALNLTDNGTILFSQNVSNEANNNGGAITAKTL EECCCCCEEEECCCCEEECCCHHHHCCCEEEECCCCEEEEECCCCCCCCCCCCEEEEEEE SISGNTSSITFTSNSAKKLGGAIYSSAAASISGNTGQLVFMNNKGETGGGALGFEASSSI EECCCCCEEEEECCCHHHHHHHHHHCCHHCCCCCCCEEEEECCCCCCCCCEECCCCCCCC TQNSSLFFSGNTATDAAGKGGAIYCEKTGETPTLTISGNKSLTFAENSSVTQGGAICAHG CCCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEECCCEEEEECCCCCCCCCEEEEEC LDLSAAGPTLFSNNRCGNTAAGKGGAIAIADSGSLSLSANQGDITFLGNTLTSTSAPTST CCCCCCCCEEECCCCCCCCCCCCCCEEEEECCCCEEEECCCCCEEEEECCCCCCCCCCCC RNAIYLGSSAKITNLRAAQGQSIYFYDPIASNTTGASDVLTINQPDSNSPLDYSGTIVFS CCEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEC GEKLSADEAKAADNFTSILKQPLALASGTLALKGNVELDVNGFTQTEGSTLLMQPGTKLK CCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCCCCCCCEEEECCCCCCC ADTEAISLTKLVVDLSALEGNKSVSIETAGANKTITLTSPLVFQDSSGNFYESHTINQAF CCCHHHHHEEEEEEHHHCCCCCEEEEEECCCCEEEEEECCEEEECCCCCEEECCCCHHHH TQPLVVFTAATAASDIYIDALLTSPVQTPEPHYGYQGHWEATWADTSTAKSGTMTWVTTG CCCEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECC YNPNPERRASVVPDSLWASFTDIRTLQQIMTSQANSIYQQRGLWASGTANFFHKDKSGTN CCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCC QAFRHKSYGYIVGGSAEDFSENIFSVAFCQLFGKDKDLFIVENTSHNYLASLYLQHRAFL HHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHH GGLPMPSFGSITDMLKDIPLILNAQLSYSYTKNDMDTRYTSYPEAQGSWTNNSGALELGG CCCCCCCCCCHHHHHHCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECC SLALYLPKEAPFFQGYFPFLKFQAVYSRQQNFKESGAEARAFDDGDLVNCSIPVGIRLEK EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCEEEEE ISEDEKNNFEISLAYIGDVYRKNPRSRTSLMVSGASWTSLCKNLARQAFLASAGSHLTLS CCCCCCCCEEEEEEEECHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEC PHVELSGEAAYELRGSAHIYNVDCGLRYSF CCEEECCCEEEEECCCEEEEEECCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10539856; 10192388; 10684935; 10871362 [H]