| Definition | Chlamydophila pneumoniae J138, complete genome. |
|---|---|
| Accession | NC_002491 |
| Length | 1,226,565 |
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The map label for this gene is pmp_9
Identifier: 15835980
GI number: 15835980
Start: 499885
End: 502671
Strand: Direct
Name: pmp_9
Synonym: CPj0447
Alternate gene names: 15835980
Gene position: 499885-502671 (Clockwise)
Preceding gene: 15835979
Following gene: 15835983
Centisome position: 40.75
GC content: 43.92
Gene sequence:
>2787_bases ATGAAATCCTCTCTTCATTGGTTTTTAATCTCGTCATCTTTAGCACTTCCCTTGTCACTAAATTTCTCTGCGTTTGCTGC TGTTGTTGAAATCAATCTAGGACCTACCAATAGCTTCTCTGGACCAGGAACCTACACTCCTCCAGCCCAAACAACAAATG CAGATGGAACTATCTATAATCTAACAGGGGATGTCTCAATCACCAATGCAGGATCTCCGACAGCTCTAACCGCTTCCTGC TTTAAAGAAACTACTGGGAATCTTTCTTTCCAAGGCCACGGCTACCAATTTCTCCTACAAAATATCGATGCGGGAGCGAA CTGTACCTTTACCAATACAGCTGCAAATAAGCTTCTCTCCTTTTCAGGATTCTCCTATTTGTCACTAATACAAACCACGA ATGCTACCACAGGAACAGGAGCCATCAAGTCCACAGGAGCTTGTTCTATTCAGTCGAACTATAGTTGCTACTTTGGCCAA AACTTTTCTAATGACAATGGAGGCGCCCTCCAAGGCAGCTCTATCAGTCTATCGCTAAACCCCAACCTAACGTTTGCCAA AAACAAAGCAACGCAAAAAGGGGGTGCCCTCTATTCCACGGGAGGGATTACAATTAACAATACGTTAAACTCAGCATCAT TTTCTGAAAATACCGCGGCGAACAATGGCGGAGCCATTTACACGGAAGCTAGCAGTTTTATTAGCAGCAACAAAGCAATT AGCTTTATAAACAATAGTGTGACCGCAACCTCAGCTACAGGGGGAGCCATTTACTGTAGTAGTACATCAGCCCCCAAACC AGTCTTAACTCTATCAGACAACGGGGAACTGAACTTTATAGGAAATACAGCAATTACTAGTGGTGGGGCGATTTATACTG ACAATCTAGTTCTTTCTTCTGGAGGACCTACGCTTTTTAAAAACAACTCTGCTATAGATACTGCAGCTCCCTTAGGAGGA GCAATTGCGATTGCTGACTCTGGATCTTTGAGTCTTTCGGCTCTTGGTGGAGACATCACTTTTGAAGGAAACACAGTAGT CAAAGGAGCTTCTTCGAGTCAGACCACTACCAGAAATTCTATTAACATCGGAAACACCAATGCTAAGATTGTACAGCTGC GAGCCTCTCAAGGCAATACTATCTACTTCTATGATCCTATAACAACTAGCATCACTGCAGCTCTCTCAGATGCTCTAAAC TTAAATGGTCCTGACCTTGCAGGGAATCCTGCATATCAAGGAACCATCGTATTTTCTGGAGAGAAGCTCTCGGAAGCAGA AGCTGCAGAAGCTGATAATCTCAAATCTACAATTCAGCAACCTCTAACTCTTGCGGGAGGGCAACTCTCTCTTAAATCAG GAGTCACTCTAGTTGCCAAGTCCTTTTCGCAATCTCCGGGCTCTACCCTCCTCATGGATGCAGGGACCACATTAGAAACC GCTGATGGGATCACTATCAATAATCTTGTTCTCAATGTAGATTCCTTAAAAGAGACCAAGAAGGCTACGCTAAAAGCAAC ACAAGCAAGTCAGACAGTCACTTTATCTGGATCGCTCTCTCTTGTAGATCCTTCTGGAAATGTCTACGAAGATGTCTCTT GGAATAACCCTCAAGTCTTTTCTTGTCTCACTCTTACTGCTGACGACCCCGCGAATATTCACATCACAGACTTAGCTGCT GATCCCCTAGAAAAAAATCCTATCCATTGGGGATACCAAGGGAATTGGGCATTATCTTGGCAAGAGGATACTGCGACTAA ATCCAAAGCAGCGACTCTTACCTGGACAAAAACAGGATACAATCCGAATCCTGAGCGTCGTGGAACCTTAGTTGCTAACA CACTATGGGGATCCTTTGTTGATGTGCGCTCCATACAACAGCTTGTAGCCACTAAAGTACGCCAATCTCAAGAAACTCGC GGCATCTGGTGTGAAGGGATCTCGAACTTCTTCCATAAAGATAGCACGAAGATAAATAAAGGTTTTCGCCACATAAGTGC AGGTTATGTTGTAGGAGCGACTACAACATTAGCTTCTGATAATCTTATCACTGCAGCCTTCTGCCAATTATTCGGGAAAG ATAGAGATCACTTTATAAATAAAAATAGAGCTTCTGCCTATGCAGCTTCTCTCCATCTCCAGCATCTAGCGACCTTGTCT TCTCCAAGCTTGTTACGCTACCTTCCTGGATCTGAAAGTGAGCAGCCTGTCCTCTTTGATGCTCAGATCAGCTATATCTA TAGTAAAAATACTATGAAAACCTATTACACCCAAGCACCAAAGGGAGAGAGCTCGTGGTATAATGACGGTTGCGCTCTGG AACTTGCGAGCTCCCTACCACACACTGCTTTAAGCCATGAGGGTCTCTTCCACGCGTATTTTCCTTTCATCAAAGTAGAA GCTTCGTACATACACCAAGATAGCTTCAAAGAACGTAATACTACCTTGGTACGATCTTTCGATAGCGGTGATTTAATTAA CGTCTCTGTGCCTATTGGAATTACCTTCGAGAGATTCTCGAGAAACGAGCGTGCGTCTTACGAAGCTACTGTCATCTACG TTGCCGATGTCTATCGTAAGAATCCTGACTGCACGACAGCTCTCCTAATCAACAATACCTCGTGGAAAACTACAGGAACG AATCTCTCAAGACAAGCTGGTATCGGAAGAGCAGGGATCTTTTATGCCTTCTCTCCAAATCTTGAGGTCACAAGTAACCT ATCTATGGAAATTCGTGGATCTTCACGCAGCTACAATGCAGATCTTGGAGGTAAGTTCCAGTTCTAA
Upstream 100 bases:
>100_bases TGTAGATTCTTAACTTACTAGTCTCTCCTTTCCTCTTGCTTTCTTTAATTTATTGCAGTATGTGGTGAAATAATTTGTTA AACCACCTATAGCCCTCTAC
Downstream 100 bases:
>100_bases AAGCGTTCCTGATCCCTTAGAAATTCTAAGAGATCCTGAGTGTATCTAGGGACTTCTCAAAGACAATGCGCCTTGTTTAG ACGAGGAGAAGTCGAAAGAT
Product: hypothetical protein
Products: NA
Alternate protein names: Outer membrane protein 10; Polymorphic membrane protein 9
Number of amino acids: Translated: 928; Mature: 928
Protein sequence:
>928_residues MKSSLHWFLISSSLALPLSLNFSAFAAVVEINLGPTNSFSGPGTYTPPAQTTNADGTIYNLTGDVSITNAGSPTALTASC FKETTGNLSFQGHGYQFLLQNIDAGANCTFTNTAANKLLSFSGFSYLSLIQTTNATTGTGAIKSTGACSIQSNYSCYFGQ NFSNDNGGALQGSSISLSLNPNLTFAKNKATQKGGALYSTGGITINNTLNSASFSENTAANNGGAIYTEASSFISSNKAI SFINNSVTATSATGGAIYCSSTSAPKPVLTLSDNGELNFIGNTAITSGGAIYTDNLVLSSGGPTLFKNNSAIDTAAPLGG AIAIADSGSLSLSALGGDITFEGNTVVKGASSSQTTTRNSINIGNTNAKIVQLRASQGNTIYFYDPITTSITAALSDALN LNGPDLAGNPAYQGTIVFSGEKLSEAEAAEADNLKSTIQQPLTLAGGQLSLKSGVTLVAKSFSQSPGSTLLMDAGTTLET ADGITINNLVLNVDSLKETKKATLKATQASQTVTLSGSLSLVDPSGNVYEDVSWNNPQVFSCLTLTADDPANIHITDLAA DPLEKNPIHWGYQGNWALSWQEDTATKSKAATLTWTKTGYNPNPERRGTLVANTLWGSFVDVRSIQQLVATKVRQSQETR GIWCEGISNFFHKDSTKINKGFRHISAGYVVGATTTLASDNLITAAFCQLFGKDRDHFINKNRASAYAASLHLQHLATLS SPSLLRYLPGSESEQPVLFDAQISYIYSKNTMKTYYTQAPKGESSWYNDGCALELASSLPHTALSHEGLFHAYFPFIKVE ASYIHQDSFKERNTTLVRSFDSGDLINVSVPIGITFERFSRNERASYEATVIYVADVYRKNPDCTTALLINNTSWKTTGT NLSRQAGIGRAGIFYAFSPNLEVTSNLSMEIRGSSRSYNADLGGKFQF
Sequences:
>Translated_928_residues MKSSLHWFLISSSLALPLSLNFSAFAAVVEINLGPTNSFSGPGTYTPPAQTTNADGTIYNLTGDVSITNAGSPTALTASC FKETTGNLSFQGHGYQFLLQNIDAGANCTFTNTAANKLLSFSGFSYLSLIQTTNATTGTGAIKSTGACSIQSNYSCYFGQ NFSNDNGGALQGSSISLSLNPNLTFAKNKATQKGGALYSTGGITINNTLNSASFSENTAANNGGAIYTEASSFISSNKAI SFINNSVTATSATGGAIYCSSTSAPKPVLTLSDNGELNFIGNTAITSGGAIYTDNLVLSSGGPTLFKNNSAIDTAAPLGG AIAIADSGSLSLSALGGDITFEGNTVVKGASSSQTTTRNSINIGNTNAKIVQLRASQGNTIYFYDPITTSITAALSDALN LNGPDLAGNPAYQGTIVFSGEKLSEAEAAEADNLKSTIQQPLTLAGGQLSLKSGVTLVAKSFSQSPGSTLLMDAGTTLET ADGITINNLVLNVDSLKETKKATLKATQASQTVTLSGSLSLVDPSGNVYEDVSWNNPQVFSCLTLTADDPANIHITDLAA DPLEKNPIHWGYQGNWALSWQEDTATKSKAATLTWTKTGYNPNPERRGTLVANTLWGSFVDVRSIQQLVATKVRQSQETR GIWCEGISNFFHKDSTKINKGFRHISAGYVVGATTTLASDNLITAAFCQLFGKDRDHFINKNRASAYAASLHLQHLATLS SPSLLRYLPGSESEQPVLFDAQISYIYSKNTMKTYYTQAPKGESSWYNDGCALELASSLPHTALSHEGLFHAYFPFIKVE ASYIHQDSFKERNTTLVRSFDSGDLINVSVPIGITFERFSRNERASYEATVIYVADVYRKNPDCTTALLINNTSWKTTGT NLSRQAGIGRAGIFYAFSPNLEVTSNLSMEIRGSSRSYNADLGGKFQF >Mature_928_residues MKSSLHWFLISSSLALPLSLNFSAFAAVVEINLGPTNSFSGPGTYTPPAQTTNADGTIYNLTGDVSITNAGSPTALTASC FKETTGNLSFQGHGYQFLLQNIDAGANCTFTNTAANKLLSFSGFSYLSLIQTTNATTGTGAIKSTGACSIQSNYSCYFGQ NFSNDNGGALQGSSISLSLNPNLTFAKNKATQKGGALYSTGGITINNTLNSASFSENTAANNGGAIYTEASSFISSNKAI SFINNSVTATSATGGAIYCSSTSAPKPVLTLSDNGELNFIGNTAITSGGAIYTDNLVLSSGGPTLFKNNSAIDTAAPLGG AIAIADSGSLSLSALGGDITFEGNTVVKGASSSQTTTRNSINIGNTNAKIVQLRASQGNTIYFYDPITTSITAALSDALN LNGPDLAGNPAYQGTIVFSGEKLSEAEAAEADNLKSTIQQPLTLAGGQLSLKSGVTLVAKSFSQSPGSTLLMDAGTTLET ADGITINNLVLNVDSLKETKKATLKATQASQTVTLSGSLSLVDPSGNVYEDVSWNNPQVFSCLTLTADDPANIHITDLAA DPLEKNPIHWGYQGNWALSWQEDTATKSKAATLTWTKTGYNPNPERRGTLVANTLWGSFVDVRSIQQLVATKVRQSQETR GIWCEGISNFFHKDSTKINKGFRHISAGYVVGATTTLASDNLITAAFCQLFGKDRDHFINKNRASAYAASLHLQHLATLS SPSLLRYLPGSESEQPVLFDAQISYIYSKNTMKTYYTQAPKGESSWYNDGCALELASSLPHTALSHEGLFHAYFPFIKVE ASYIHQDSFKERNTTLVRSFDSGDLINVSVPIGITFERFSRNERASYEATVIYVADVYRKNPDCTTALLINNTSWKTTGT NLSRQAGIGRAGIFYAFSPNLEVTSNLSMEIRGSSRSYNADLGGKFQF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted, cell wall. Cell outer membrane; Peripheral membrane protein; Extracellular side (Potential)
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 autotransporter (TC 1.B.12) domain
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): PMP9_CHLPN (Q9Z398)
Other databases:
- EMBL: AJ133034 - EMBL: AE001363 - EMBL: AE002161 - EMBL: BA000008 - EMBL: AE009440 - PIR: B72077 - PIR: E86546 - RefSeq: NP_224647.1 - RefSeq: NP_300504.1 - RefSeq: NP_444855.1 - RefSeq: NP_876738.1 - ProteinModelPortal: Q9Z398 - GeneID: 1467145 - GeneID: 894740 - GeneID: 919184 - GeneID: 963808 - GenomeReviews: AE001363_GR - GenomeReviews: AE002161_GR - GenomeReviews: AE009440_GR - GenomeReviews: BA000008_GR - KEGG: cpa:CP0306 - KEGG: cpn:CPn0447 - KEGG: cpt:CpB0464 - TIGR: CP_0306 - HOGENOM: HBG415279 - OMA: QKTRNYY - ProtClustDB: CLSK337232 - BioCyc: CPNE115711:CP_0306-MONOMER - BioCyc: CPNE115713:CPN0447-MONOMER - BioCyc: CPNE138677:CPJ0447-MONOMER - BioCyc: CPNE182082:CPB0464-MONOMER - InterPro: IPR005546 - InterPro: IPR003368 - InterPro: IPR006315 - InterPro: IPR006626 - InterPro: IPR011427 - SMART: SM00869 - SMART: SM00710 - TIGRFAMs: TIGR01414 - TIGRFAMs: TIGR01376
Pfam domain/function: PF03797 Autotransporter; PF02415 Chlam_PMP; PF07548 ChlamPMP_M; SSF103515 Auto_transptbeta
EC number: NA
Molecular weight: Translated: 98334; Mature: 98334
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: PS51208 AUTOTRANSPORTER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSSLHWFLISSSLALPLSLNFSAFAAVVEINLGPTNSFSGPGTYTPPAQTTNADGTIYN CCCCEEEEEEECCEEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEE LTGDVSITNAGSPTALTASCFKETTGNLSFQGHGYQFLLQNIDAGANCTFTNTAANKLLS EECCEEEECCCCCCEEEHHHHHHCCCCEEECCCCCEEEEECCCCCCCEEEECHHHHHHEE FSGFSYLSLIQTTNATTGTGAIKSTGACSIQSNYSCYFGQNFSNDNGGALQGSSISLSLN CCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCEEECCEEEEEEC PNLTFAKNKATQKGGALYSTGGITINNTLNSASFSENTAANNGGAIYTEASSFISSNKAI CCEEEEECCCCCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHCCCCEE SFINNSVTATSATGGAIYCSSTSAPKPVLTLSDNGELNFIGNTAITSGGAIYTDNLVLSS EEECCCEEEECCCCCEEEECCCCCCCCEEEECCCCCEEEEECCEECCCCEEEECCEEEEC GGPTLFKNNSAIDTAAPLGGAIAIADSGSLSLSALGGDITFEGNTVVKGASSSQTTTRNS CCCEEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCEEEECCCEEEECCCCCCCCCCCE INIGNTNAKIVQLRASQGNTIYFYDPITTSITAALSDALNLNGPDLAGNPAYQGTIVFSG EEECCCCEEEEEEEECCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECC EKLSEAEAAEADNLKSTIQQPLTLAGGQLSLKSGVTLVAKSFSQSPGSTLLMDAGTTLET CCCCCHHHHHHHHHHHHHHCCCEECCCEEEECCCCEEEEHHHCCCCCCEEEEECCCEEEC ADGITINNLVLNVDSLKETKKATLKATQASQTVTLSGSLSLVDPSGNVYEDVSWNNPQVF CCCEEEEEEEEEHHHHHHHHHHHEEEECCCEEEEEECEEEEECCCCCEEECCCCCCCEEE SCLTLTADDPANIHITDLAADPLEKNPIHWGYQGNWALSWQEDTATKSKAATLTWTKTGY EEEEEECCCCCCEEEEECCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEEEEECCC NPNPERRGTLVANTLWGSFVDVRSIQQLVATKVRQSQETRGIWCEGISNFFHKDSTKINK CCCCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCHHHH GFRHISAGYVVGATTTLASDNLITAAFCQLFGKDRDHFINKNRASAYAASLHLQHLATLS CHHEEECCEEEEEEEEECCCCCHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHCC SPSLLRYLPGSESEQPVLFDAQISYIYSKNTMKTYYTQAPKGESSWYNDGCALELASSLP CCCEEEECCCCCCCCCEEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCCEEEEEHHCCC HTALSHEGLFHAYFPFIKVEASYIHQDSFKERNTTLVRSFDSGDLINVSVPIGITFERFS CCHHCCCCEEEEECCEEEEEEHHHCCCCCCCCCCEEEEECCCCCEEEEEEECEEEEHHHC RNERASYEATVIYVADVYRKNPDCTTALLINNTSWKTTGTNLSRQAGIGRAGIFYAFSPN CCCCCCEEEEEEEEEEHHCCCCCCEEEEEEECCCCEECCCCCHHHCCCCCCEEEEEECCC LEVTSNLSMEIRGSSRSYNADLGGKFQF CEEECCEEEEEECCCCCCCCCCCCEECC >Mature Secondary Structure MKSSLHWFLISSSLALPLSLNFSAFAAVVEINLGPTNSFSGPGTYTPPAQTTNADGTIYN CCCCEEEEEEECCEEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEE LTGDVSITNAGSPTALTASCFKETTGNLSFQGHGYQFLLQNIDAGANCTFTNTAANKLLS EECCEEEECCCCCCEEEHHHHHHCCCCEEECCCCCEEEEECCCCCCCEEEECHHHHHHEE FSGFSYLSLIQTTNATTGTGAIKSTGACSIQSNYSCYFGQNFSNDNGGALQGSSISLSLN CCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCEEECCEEEEEEC PNLTFAKNKATQKGGALYSTGGITINNTLNSASFSENTAANNGGAIYTEASSFISSNKAI CCEEEEECCCCCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHCCCCEE SFINNSVTATSATGGAIYCSSTSAPKPVLTLSDNGELNFIGNTAITSGGAIYTDNLVLSS EEECCCEEEECCCCCEEEECCCCCCCCEEEECCCCCEEEEECCEECCCCEEEECCEEEEC GGPTLFKNNSAIDTAAPLGGAIAIADSGSLSLSALGGDITFEGNTVVKGASSSQTTTRNS CCCEEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCEEEECCCEEEECCCCCCCCCCCE INIGNTNAKIVQLRASQGNTIYFYDPITTSITAALSDALNLNGPDLAGNPAYQGTIVFSG EEECCCCEEEEEEEECCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECC EKLSEAEAAEADNLKSTIQQPLTLAGGQLSLKSGVTLVAKSFSQSPGSTLLMDAGTTLET CCCCCHHHHHHHHHHHHHHCCCEECCCEEEECCCCEEEEHHHCCCCCCEEEEECCCEEEC ADGITINNLVLNVDSLKETKKATLKATQASQTVTLSGSLSLVDPSGNVYEDVSWNNPQVF CCCEEEEEEEEEHHHHHHHHHHHEEEECCCEEEEEECEEEEECCCCCEEECCCCCCCEEE SCLTLTADDPANIHITDLAADPLEKNPIHWGYQGNWALSWQEDTATKSKAATLTWTKTGY EEEEEECCCCCCEEEEECCCCCCCCCCEEECCCCCEEEEECCCCCCCCCEEEEEEEECCC NPNPERRGTLVANTLWGSFVDVRSIQQLVATKVRQSQETRGIWCEGISNFFHKDSTKINK CCCCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCHHHH GFRHISAGYVVGATTTLASDNLITAAFCQLFGKDRDHFINKNRASAYAASLHLQHLATLS CHHEEECCEEEEEEEEECCCCCHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHCC SPSLLRYLPGSESEQPVLFDAQISYIYSKNTMKTYYTQAPKGESSWYNDGCALELASSLP CCCEEEECCCCCCCCCEEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCCEEEEEHHCCC HTALSHEGLFHAYFPFIKVEASYIHQDSFKERNTTLVRSFDSGDLINVSVPIGITFERFS CCHHCCCCEEEEECCEEEEEEHHHCCCCCCCCCCEEEEECCCCCEEEEEEECEEEEHHHC RNERASYEATVIYVADVYRKNPDCTTALLINNTSWKTTGTNLSRQAGIGRAGIFYAFSPN CCCCCCEEEEEEEEEEHHCCCCCCEEEEEEECCCCEECCCCCHHHCCCCCCEEEEEECCC LEVTSNLSMEIRGSSRSYNADLGGKFQF CEEECCEEEEEECCCCCCCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10539856; 10192388; 10684935; 10871362