| Definition | Chlamydophila pneumoniae J138, complete genome. |
|---|---|
| Accession | NC_002491 |
| Length | 1,226,565 |
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Identifier: 15835863
GI number: 15835863
Start: 372863
End: 374617
Strand: Direct
Name: Not Available
Synonym: CPj0328
Alternate gene names: 15835863
Gene position: 372863-374617 (Clockwise)
Preceding gene: 15835862
Following gene: 15835864
Centisome position: 30.4
GC content: 44.05
Gene sequence:
>1755_bases ATGTCTTTCTTAAGGCGTCATATTTCTCTTTTTCGTTCACAAAAACAACTTATTGATGTTTTTGCTCCCGTAAGTCCTAA CCTCGAGTTAGCTGAGATTCATCGTCGTGTTATTGAAGATCAAGGCCCTGCCCTTCTTTTTCATAATGTCATCGGATCGT CATTCCCAGTCCTGACCAATCTCTTTGGAACAAAACATCGTGTAGACCAACTTTTTTCTCAAGCTCCTGATAACCTCATC GCTCGAGTTGCCCACCTTATTTCTTCTACACCAAAGCTTTCTTCTCTATGGAAATCTCGGGATCTATTAAAAAGAATAAG CTCTTTAGGGCTCAAAAAAGCTCGATTCCGTCGCTTTCCTTTTGTTTCTATGTCCTCAGTTAACTTAGATCACCTTCCCT TACTCACAAGCTGGCCTGAAGATGGTGGAGCCTTTCTCACACTTCCTCTTGTCTATACGGAATCGCCGACTCTTACTACA CCCAATCTTGGGATGTATCGCGTGCAACGGTTCAATCAAAACACCATGGGCCTCCATTTTCAAATCCAGAAGGGCGGAGG GATGCATCTGTATGAAGCAGAGCAAAAAAAGCAAAACCTTCCTGTTTCGGTATTTTTGTCTGGAAACCCCTTTTTAACCC TTTCTGCGATTGCCCCCCTACCTGAGAATGTCTCGGAACTTCTCTTTGCTACCTTCCTCCAAGGAGCGAAGCTCCTTTAT AAAAAAACAAACGACCATCCCCACCCTCTACTCTACGATGCGGAATTCATCCTGGTCGGAGAATCTCCGGCCGGGAAACG TCGTCCTGAAGGTCCTTTTGGCGATCATTTCGGATACTACAGTCTCCAACATGACTTCCCTGAATTCCACTGTCATAAAA TCTATCACAGAAAAGATGCAATCTATCCTGCTACAGTAGTCGGCAAACCCTACCAAGAAGATTTTTATATAGGGAACAAA CTCCAAGAATACCTCTCCCCTTTATTTCCGTTAGTTATGCCTGGTGTGCGTAGACTTAAAAGTTACGGAGAATCAGGGTT TCATGCACTGACTGCGGCTGTCGTTAAAGAACGCTATTGGAGAGAATCTCTAACCACAGCTCTTAGAATTCTTGGAGAGG GCCAACTTTCCCTAACGAAATTCCTAATGGTCACAGACCAAGAGGTGCCTCTCGACAGGTTCTCCGTGGTTCTAGAAACC ATTTTAGAGCGTCTACAGCCAGACCGAGATCTTATTATTTTCTCAGAAACTGCAAACGATACGTTAGACTATACAGGACC AAGCTTAAATAAGGGCTCCAAGGGAATCTTCATGGGAATAGGAAAAGCCATCCGAGACCTTCCCCATGGATATCAGGGAG GAAAAATCCATGGAGTTCAAGACATCGCTCCCTTTTGTCGTGGTTGCCTAGTGTTGGAAACATCCCTCGAGGACCGATGT ATTAAATCTCTCCTTCACCATCCAGATCTAAAATCATGGCCTCTGATTATCCTTGCCGATAATCTGAGAGAAACCATTCA AAGTGAAAAAGATTTTCTCTGGAGGACCTTCACACGATGTGCCCCAGCAAATGATCTTCACGCGCTCCACAGCCATTTTG CTACTCACCGTCCTAATTACAACTTTCCCTTCGTTATCGATGCCCTGATGAAGCCTTCCTATCCTAAAGAAGTAGAGGTC GACCCATCTACAAAACAAAAGGTTTCCGAACGATGGCACGCATATTTCCCCAATAAAGAAACTTTTTATATTTAA
Upstream 100 bases:
>100_bases CTAGCGCTCTTCGTCACATTGATAAGCTCGGATTAGAGAAAGTTCTCGAAAGAGCTAAAAGTAAAAATTTTTAATTTAAC TTAAGTATAGGGAAATATTT
Downstream 100 bases:
>100_bases TAAGAATCTTATTCTATTAAACGTTTAATTAAATTAGTTATTTTTATTTTTAAAAATATATAAAAACAAAAAAGCTATTT TAAGAGTAAAAAATGAATAA
Product: hypothetical protein
Products: NA
Alternate protein names: 4-hydroxybenzoate DC; HBDC
Number of amino acids: Translated: 584; Mature: 583
Protein sequence:
>584_residues MSFLRRHISLFRSQKQLIDVFAPVSPNLELAEIHRRVIEDQGPALLFHNVIGSSFPVLTNLFGTKHRVDQLFSQAPDNLI ARVAHLISSTPKLSSLWKSRDLLKRISSLGLKKARFRRFPFVSMSSVNLDHLPLLTSWPEDGGAFLTLPLVYTESPTLTT PNLGMYRVQRFNQNTMGLHFQIQKGGGMHLYEAEQKKQNLPVSVFLSGNPFLTLSAIAPLPENVSELLFATFLQGAKLLY KKTNDHPHPLLYDAEFILVGESPAGKRRPEGPFGDHFGYYSLQHDFPEFHCHKIYHRKDAIYPATVVGKPYQEDFYIGNK LQEYLSPLFPLVMPGVRRLKSYGESGFHALTAAVVKERYWRESLTTALRILGEGQLSLTKFLMVTDQEVPLDRFSVVLET ILERLQPDRDLIIFSETANDTLDYTGPSLNKGSKGIFMGIGKAIRDLPHGYQGGKIHGVQDIAPFCRGCLVLETSLEDRC IKSLLHHPDLKSWPLIILADNLRETIQSEKDFLWRTFTRCAPANDLHALHSHFATHRPNYNFPFVIDALMKPSYPKEVEV DPSTKQKVSERWHAYFPNKETFYI
Sequences:
>Translated_584_residues MSFLRRHISLFRSQKQLIDVFAPVSPNLELAEIHRRVIEDQGPALLFHNVIGSSFPVLTNLFGTKHRVDQLFSQAPDNLI ARVAHLISSTPKLSSLWKSRDLLKRISSLGLKKARFRRFPFVSMSSVNLDHLPLLTSWPEDGGAFLTLPLVYTESPTLTT PNLGMYRVQRFNQNTMGLHFQIQKGGGMHLYEAEQKKQNLPVSVFLSGNPFLTLSAIAPLPENVSELLFATFLQGAKLLY KKTNDHPHPLLYDAEFILVGESPAGKRRPEGPFGDHFGYYSLQHDFPEFHCHKIYHRKDAIYPATVVGKPYQEDFYIGNK LQEYLSPLFPLVMPGVRRLKSYGESGFHALTAAVVKERYWRESLTTALRILGEGQLSLTKFLMVTDQEVPLDRFSVVLET ILERLQPDRDLIIFSETANDTLDYTGPSLNKGSKGIFMGIGKAIRDLPHGYQGGKIHGVQDIAPFCRGCLVLETSLEDRC IKSLLHHPDLKSWPLIILADNLRETIQSEKDFLWRTFTRCAPANDLHALHSHFATHRPNYNFPFVIDALMKPSYPKEVEV DPSTKQKVSERWHAYFPNKETFYI >Mature_583_residues SFLRRHISLFRSQKQLIDVFAPVSPNLELAEIHRRVIEDQGPALLFHNVIGSSFPVLTNLFGTKHRVDQLFSQAPDNLIA RVAHLISSTPKLSSLWKSRDLLKRISSLGLKKARFRRFPFVSMSSVNLDHLPLLTSWPEDGGAFLTLPLVYTESPTLTTP NLGMYRVQRFNQNTMGLHFQIQKGGGMHLYEAEQKKQNLPVSVFLSGNPFLTLSAIAPLPENVSELLFATFLQGAKLLYK KTNDHPHPLLYDAEFILVGESPAGKRRPEGPFGDHFGYYSLQHDFPEFHCHKIYHRKDAIYPATVVGKPYQEDFYIGNKL QEYLSPLFPLVMPGVRRLKSYGESGFHALTAAVVKERYWRESLTTALRILGEGQLSLTKFLMVTDQEVPLDRFSVVLETI LERLQPDRDLIIFSETANDTLDYTGPSLNKGSKGIFMGIGKAIRDLPHGYQGGKIHGVQDIAPFCRGCLVLETSLEDRCI KSLLHHPDLKSWPLIILADNLRETIQSEKDFLWRTFTRCAPANDLHALHSHFATHRPNYNFPFVIDALMKPSYPKEVEVD PSTKQKVSERWHAYFPNKETFYI
Specific function: Catalyzes the reversible decarboxylation of 4- hydroxybenzoate
COG id: COG0043
COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ubiD family
Homologues:
Organism=Escherichia coli, GI1790277, Length=442, Percent_Identity=32.3529411764706, Blast_Score=223, Evalue=4e-59,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): BSDC_CHLPN (Q9Z8L0)
Other databases:
- EMBL: AE001363 - EMBL: AE002161 - EMBL: BA000008 - EMBL: AE009440 - PIR: A72092 - PIR: H86531 - RefSeq: NP_224533.1 - RefSeq: NP_300387.1 - RefSeq: NP_444977.1 - RefSeq: NP_876614.1 - ProteinModelPortal: Q9Z8L0 - SMR: Q9Z8L0 - GeneID: 1467021 - GeneID: 894714 - GeneID: 919104 - GeneID: 963535 - GenomeReviews: AE001363_GR - GenomeReviews: AE002161_GR - GenomeReviews: AE009440_GR - GenomeReviews: BA000008_GR - KEGG: cpa:CP0429 - KEGG: cpj:CPj0328 - KEGG: cpn:CPn0328 - KEGG: cpt:CpB0338 - TIGR: CP_0429 - HOGENOM: HBG564733 - OMA: AAGVHPL - PhylomeDB: Q9Z8L0 - ProtClustDB: CLSK871177 - BioCyc: CPNE115711:CP_0429-MONOMER - BioCyc: CPNE115713:CPN0328-MONOMER - BioCyc: CPNE138677:CPJ0328-MONOMER - BioCyc: CPNE182082:CPB0338-MONOMER - InterPro: IPR002830 - InterPro: IPR022390 - InterPro: IPR009002 - TIGRFAMs: TIGR00148 - TIGRFAMs: TIGR03701
Pfam domain/function: PF01977 UbiD; SSF50475 FMN_binding
EC number: =4.1.1.61
Molecular weight: Translated: 66507; Mature: 66376
Theoretical pI: Translated: 9.08; Mature: 9.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFLRRHISLFRSQKQLIDVFAPVSPNLELAEIHRRVIEDQGPALLFHNVIGSSFPVLTN CHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEHHHHCCCCHHHHH LFGTKHRVDQLFSQAPDNLIARVAHLISSTPKLSSLWKSRDLLKRISSLGLKKARFRRFP HHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCC FVSMSSVNLDHLPLLTSWPEDGGAFLTLPLVYTESPTLTTPNLGMYRVQRFNQNTMGLHF CEEECCCCCCCCCCEECCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHCCCCCCEEEE QIQKGGGMHLYEAEQKKQNLPVSVFLSGNPFLTLSAIAPLPENVSELLFATFLQGAKLLY EEECCCCEEEEECHHHHCCCCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH KKTNDHPHPLLYDAEFILVGESPAGKRRPEGPFGDHFGYYSLQHDFPEFHCHKIYHRKDA HCCCCCCCCEEEECEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCC IYPATVVGKPYQEDFYIGNKLQEYLSPLFPLVMPGVRRLKSYGESGFHALTAAVVKERYW CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH RESLTTALRILGEGQLSLTKFLMVTDQEVPLDRFSVVLETILERLQPDRDLIIFSETAND HHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCC TLDYTGPSLNKGSKGIFMGIGKAIRDLPHGYQGGKIHGVQDIAPFCRGCLVLETSLEDRC CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHCCEEEEECCHHHHH IKSLLHHPDLKSWPLIILADNLRETIQSEKDFLWRTFTRCAPANDLHALHSHFATHRPNY HHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC NFPFVIDALMKPSYPKEVEVDPSTKQKVSERWHAYFPNKETFYI CCCHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHCCCCCCEECC >Mature Secondary Structure SFLRRHISLFRSQKQLIDVFAPVSPNLELAEIHRRVIEDQGPALLFHNVIGSSFPVLTN HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEHHHHCCCCHHHHH LFGTKHRVDQLFSQAPDNLIARVAHLISSTPKLSSLWKSRDLLKRISSLGLKKARFRRFP HHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCC FVSMSSVNLDHLPLLTSWPEDGGAFLTLPLVYTESPTLTTPNLGMYRVQRFNQNTMGLHF CEEECCCCCCCCCCEECCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHCCCCCCEEEE QIQKGGGMHLYEAEQKKQNLPVSVFLSGNPFLTLSAIAPLPENVSELLFATFLQGAKLLY EEECCCCEEEEECHHHHCCCCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHH KKTNDHPHPLLYDAEFILVGESPAGKRRPEGPFGDHFGYYSLQHDFPEFHCHKIYHRKDA HCCCCCCCCEEEECEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHCCC IYPATVVGKPYQEDFYIGNKLQEYLSPLFPLVMPGVRRLKSYGESGFHALTAAVVKERYW CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH RESLTTALRILGEGQLSLTKFLMVTDQEVPLDRFSVVLETILERLQPDRDLIIFSETAND HHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCC TLDYTGPSLNKGSKGIFMGIGKAIRDLPHGYQGGKIHGVQDIAPFCRGCLVLETSLEDRC CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHCCEEEEECCHHHHH IKSLLHHPDLKSWPLIILADNLRETIQSEKDFLWRTFTRCAPANDLHALHSHFATHRPNY HHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC NFPFVIDALMKPSYPKEVEVDPSTKQKVSERWHAYFPNKETFYI CCCHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10192388; 10684935; 10871362