| Definition | Chlamydophila pneumoniae J138, complete genome. |
|---|---|
| Accession | NC_002491 |
| Length | 1,226,565 |
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Identifier: 15835864
GI number: 15835864
Start: 374710
End: 375771
Strand: Direct
Name: Not Available
Synonym: CPj0329
Alternate gene names: 15835864
Gene position: 374710-375771 (Clockwise)
Preceding gene: 15835863
Following gene: 15835869
Centisome position: 30.55
GC content: 35.5
Gene sequence:
>1062_bases ATGAATAAAAGACAAAAAGATAAATTAAAAATCTGTGTTATTATTAGCACGTTGATTTTAGTAGGAATTTTTGCAAGAGC TCCTCGTGGTGACACTTTTAAGACTTTTTTAAAGTCTGAAGAAGCTATCATCTACTCAAATCAATGCAATGAGGACATGC GTAAAATTCTATGCGATGCTATAGAACACGCTGATGAAGAGATCTTCCTACGTATTTATAACCTCTCAGAACCCAAGATC CAACAGAGTTTAACTCGACAAGCTCAAGCAAAAAACAAAGTTACGATCTACTATCAAAAATTTAAAATTCCCCAAATCTT AAAGCAAGCCAGCAATGTAACTTTAGTCGAGCAACCTCCAGCAGGGCGTAAACTGATGCATCAAAAAGCTCTTTCCATAG ATAAGAAAGATGCTTGGCTAGGATCTGCGAACTACACCAATCTTTCTCTACGTTTAGATAATAATCTCATTCTAGGAATG CATAGCTCGGAGCTCTGTGATCTCATTATCACAAATACCTCTGGAGACTTTTCTATAAAGGATCAAACAGGAAAGTATTT TGTTCTTCCTCAAGATCGTAAAATTGCAATACAAGCTGTACTCGAAAAAATCCAGACAGCTCAGAAAACCATCCAAGTTG CTATGTTTGCTCTGACCCACTCGGAGATTATTCAAGCCTTACATCAAGCAAAACAACGAGGAATCCATGTAGATATTATC ATTGATAGAAGTCATAGCAAACTTACTTTTAAGCAATTACGACAATTAAATATCAATAAAGACTTTGTTTCTATAAATAC CGCACCCTGTACTCTTCACCATAAGTTTGCAGTTATAGATAATAAAACTCTACTTGCAGGATCTATAAATTGGTCTAAAG GAAGATTCTCCTTAAATGATGAAAGCTTGATCATACTGGAAAACCTGACCAAACAACAAAATCAGAAACTTCGAATGATT TGGAAAGATCTAGCTAAGCATTCAGAACATCCTACAGTAGACGATGAAGAAAAAGAAATTATAGAAAAAAGTCTTCCAGT AGAAGAGCAAGAAGCAGCGTGA
Upstream 100 bases:
>100_bases ATATTTAATAAGAATCTTATTCTATTAAACGTTTAATTAAATTAGTTATTTTTATTTTTAAAAATATATAAAAACAAAAA AGCTATTTTAAGAGTAAAAA
Downstream 100 bases:
>100_bases TGATCTAAAATAGTCACAGAAGAAGGCCTAGCTCGTGATTCAAGTATGTCTAGGCCTCTTCATCCTTTTGATAAAAAAGA GTGGAGGCAGTTTCTAAGAC
Product: phopholipase D superfamily protein
Products: NA
Alternate protein names: PLD; Choline phosphatase [H]
Number of amino acids: Translated: 353; Mature: 353
Protein sequence:
>353_residues MNKRQKDKLKICVIISTLILVGIFARAPRGDTFKTFLKSEEAIIYSNQCNEDMRKILCDAIEHADEEIFLRIYNLSEPKI QQSLTRQAQAKNKVTIYYQKFKIPQILKQASNVTLVEQPPAGRKLMHQKALSIDKKDAWLGSANYTNLSLRLDNNLILGM HSSELCDLIITNTSGDFSIKDQTGKYFVLPQDRKIAIQAVLEKIQTAQKTIQVAMFALTHSEIIQALHQAKQRGIHVDII IDRSHSKLTFKQLRQLNINKDFVSINTAPCTLHHKFAVIDNKTLLAGSINWSKGRFSLNDESLIILENLTKQQNQKLRMI WKDLAKHSEHPTVDDEEKEIIEKSLPVEEQEAA
Sequences:
>Translated_353_residues MNKRQKDKLKICVIISTLILVGIFARAPRGDTFKTFLKSEEAIIYSNQCNEDMRKILCDAIEHADEEIFLRIYNLSEPKI QQSLTRQAQAKNKVTIYYQKFKIPQILKQASNVTLVEQPPAGRKLMHQKALSIDKKDAWLGSANYTNLSLRLDNNLILGM HSSELCDLIITNTSGDFSIKDQTGKYFVLPQDRKIAIQAVLEKIQTAQKTIQVAMFALTHSEIIQALHQAKQRGIHVDII IDRSHSKLTFKQLRQLNINKDFVSINTAPCTLHHKFAVIDNKTLLAGSINWSKGRFSLNDESLIILENLTKQQNQKLRMI WKDLAKHSEHPTVDDEEKEIIEKSLPVEEQEAA >Mature_353_residues MNKRQKDKLKICVIISTLILVGIFARAPRGDTFKTFLKSEEAIIYSNQCNEDMRKILCDAIEHADEEIFLRIYNLSEPKI QQSLTRQAQAKNKVTIYYQKFKIPQILKQASNVTLVEQPPAGRKLMHQKALSIDKKDAWLGSANYTNLSLRLDNNLILGM HSSELCDLIITNTSGDFSIKDQTGKYFVLPQDRKIAIQAVLEKIQTAQKTIQVAMFALTHSEIIQALHQAKQRGIHVDII IDRSHSKLTFKQLRQLNINKDFVSINTAPCTLHHKFAVIDNKTLLAGSINWSKGRFSLNDESLIILENLTKQQNQKLRMI WKDLAKHSEHPTVDDEEKEIIEKSLPVEEQEAA
Specific function: Could be a virulence factor [H]
COG id: COG1502
COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes
Gene ontology:
Cell location: Secreted (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PLD phosphodiesterase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001736 [H]
Pfam domain/function: NA
EC number: =3.1.4.4 [H]
Molecular weight: Translated: 40353; Mature: 40353
Theoretical pI: Translated: 9.46; Mature: 9.46
Prosite motif: PS50035 PLD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKRQKDKLKICVIISTLILVGIFARAPRGDTFKTFLKSEEAIIYSNQCNEDMRKILCDA CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCHHHHHHHHHH IEHADEEIFLRIYNLSEPKIQQSLTRQAQAKNKVTIYYQKFKIPQILKQASNVTLVEQPP HHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCCEEEEECCC AGRKLMHQKALSIDKKDAWLGSANYTNLSLRLDNNLILGMHSSELCDLIITNTSGDFSIK CCHHHHHHHHHCCCCCCCEECCCCCEEEEEEECCEEEEEECCCCCEEEEEECCCCCEEEE DQTGKYFVLPQDRKIAIQAVLEKIQTAQKTIQVAMFALTHSEIIQALHQAKQRGIHVDII CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE IDRSHSKLTFKQLRQLNINKDFVSINTAPCTLHHKFAVIDNKTLLAGSINWSKGRFSLND EECCCCCHHHHHHHHCCCCCCEEEEECCCEEEEEEEEEEECCEEEEECCCCCCCEEEECC ESLIILENLTKQQNQKLRMIWKDLAKHSEHPTVDDEEKEIIEKSLPVEEQEAA CCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHCCC >Mature Secondary Structure MNKRQKDKLKICVIISTLILVGIFARAPRGDTFKTFLKSEEAIIYSNQCNEDMRKILCDA CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCHHHHHHHHHH IEHADEEIFLRIYNLSEPKIQQSLTRQAQAKNKVTIYYQKFKIPQILKQASNVTLVEQPP HHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCCEEEEECCC AGRKLMHQKALSIDKKDAWLGSANYTNLSLRLDNNLILGMHSSELCDLIITNTSGDFSIK CCHHHHHHHHHCCCCCCCEECCCCCEEEEEEECCEEEEEECCCCCEEEEEECCCCCEEEE DQTGKYFVLPQDRKIAIQAVLEKIQTAQKTIQVAMFALTHSEIIQALHQAKQRGIHVDII CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE IDRSHSKLTFKQLRQLNINKDFVSINTAPCTLHHKFAVIDNKTLLAGSINWSKGRFSLND EECCCCCHHHHHHHHCCCCCCEEEEECCCEEEEEEEEEEECCEEEEECCCCCCCEEEECC ESLIILENLTKQQNQKLRMIWKDLAKHSEHPTVDDEEKEIIEKSLPVEEQEAA CCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA