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The map label for this gene is rbfA

Identifier: 15835853

GI number: 15835853

Start: 362389

End: 362751

Strand: Direct

Name: rbfA

Synonym: CPj0318

Alternate gene names: 15835853

Gene position: 362389-362751 (Clockwise)

Preceding gene: 15835852

Following gene: 15835854

Centisome position: 29.55

GC content: 34.99

Gene sequence:

>363_bases
ATGACAGAAAATAGACGTATTAAACGGGTAAATGCTTTATTACAAGAAGCCATTGCAAAGGTAATTTTAAAAGATGTTAA
GCATCCCAAGATTTCTAATCTTTGGATCACGGTAACTCGTGTTTCTCTATCTAAGGATTTGCACTCTGCACGTGTTTATG
TATCTGTAATGCCTCATGAGAATACCAAGGAAGAGGCTTTAGAAGCTTTAAAAGTCTCTGCTGGTTTTATCGCTCATAGA
GCTTCGAAAAATGTCGTCCTTAAATATTTCCCAGAACTTCATTTTTATCTCGATGATATTTTCTCACCTCAAGATTATAT
AGAAAACCTGCTTTGGCAGATTCAAGAGAAAGAAAAGAGTTAA

Upstream 100 bases:

>100_bases
GGAATTTTGTTAGAAGGATACCAGCAAGCTCAAATAGGTGATGTCCTACAATGTTATGAAGTTATCTATCATCCACAAAA
ACTATAACTTGAAGTACTGT

Downstream 100 bases:

>100_bases
TAAACTATATTTTTTGGGAACTTGAATACTATTAAAGACATGACTATGGATCTTGCAGTAGAATTAAAAGAGGGCATTCT
TCTTGTAGACAAGCCTCAAG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MTENRRIKRVNALLQEAIAKVILKDVKHPKISNLWITVTRVSLSKDLHSARVYVSVMPHENTKEEALEALKVSAGFIAHR
ASKNVVLKYFPELHFYLDDIFSPQDYIENLLWQIQEKEKS

Sequences:

>Translated_120_residues
MTENRRIKRVNALLQEAIAKVILKDVKHPKISNLWITVTRVSLSKDLHSARVYVSVMPHENTKEEALEALKVSAGFIAHR
ASKNVVLKYFPELHFYLDDIFSPQDYIENLLWQIQEKEKS
>Mature_119_residues
TENRRIKRVNALLQEAIAKVILKDVKHPKISNLWITVTRVSLSKDLHSARVYVSVMPHENTKEEALEALKVSAGFIAHRA
SKNVVLKYFPELHFYLDDIFSPQDYIENLLWQIQEKEKS

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_CHLPN (Q9Z8M0)

Other databases:

- EMBL:   AE001363
- EMBL:   AE002161
- EMBL:   BA000008
- EMBL:   AE009440
- PIR:   F86530
- PIR:   G72093
- RefSeq:   NP_224523.1
- RefSeq:   NP_300377.1
- RefSeq:   NP_444987.1
- RefSeq:   NP_876604.1
- ProteinModelPortal:   Q9Z8M0
- GeneID:   1467011
- GeneID:   895549
- GeneID:   919094
- GeneID:   963559
- GenomeReviews:   AE001363_GR
- GenomeReviews:   AE002161_GR
- GenomeReviews:   AE009440_GR
- GenomeReviews:   BA000008_GR
- KEGG:   cpa:CP0439
- KEGG:   cpn:CPn0318
- KEGG:   cpt:CpB0328
- TIGR:   CP_0439
- HOGENOM:   HBG751055
- OMA:   APEIRFY
- PhylomeDB:   Q9Z8M0
- ProtClustDB:   PRK00521
- BioCyc:   CPNE115711:CP_0439-MONOMER
- BioCyc:   CPNE115713:CPN0318-MONOMER
- BioCyc:   CPNE138677:CPJ0318-MONOMER
- BioCyc:   CPNE182082:CPB0328-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13972; Mature: 13841

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTENRRIKRVNALLQEAIAKVILKDVKHPKISNLWITVTRVSLSKDLHSARVYVSVMPHE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHEEEEEEECCCC
NTKEEALEALKVSAGFIAHRASKNVVLKYFPELHFYLDDIFSPQDYIENLLWQIQEKEKS
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TENRRIKRVNALLQEAIAKVILKDVKHPKISNLWITVTRVSLSKDLHSARVYVSVMPHE
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHEEEEEEECCCC
NTKEEALEALKVSAGFIAHRASKNVVLKYFPELHFYLDDIFSPQDYIENLLWQIQEKEKS
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362