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The map label for this gene is ydaO

Identifier: 15835796

GI number: 15835796

Start: 293924

End: 294658

Strand: Direct

Name: ydaO

Synonym: CPj0261

Alternate gene names: 15835796

Gene position: 293924-294658 (Clockwise)

Preceding gene: 15835786

Following gene: 15835797

Centisome position: 23.96

GC content: 41.9

Gene sequence:

>735_bases
ATGTCCACTTTACTTTTAAATCCTCCGTGGATGAAAGCGGGAAAACGTATAGAAAGCTTGGTCCGAAAAGCACTCTATAC
CCATACCATGTTAGCAAATCATCGTAAAATTGTAGTTGCTCTCAGTGGTGGGAAAGATAGTCTTACACTTCTTTTAATGC
TCAAAGCAATTTCTGGAAGAGGATTCCCAGATTTAGATCTCCACGCGGTCAATATCGGAGGAAAATACTCTTGTGGAGCA
GAAGTTAATAAACCTTATTTAACCCGCATCTGTGATCAACTGTGCATTCCGTTTAGAACAATTCCCTCTCCTTATGCACC
CGAAACCCCAGAATGTTATCCATGCTCTCAAGCAAGGAGACGTTTACTTTTCCAAGCCGCTAAAGAAATAGGAGCTTCGG
CTATCGCTTTTGGTCATCACCGAGATGACCTCGTCCAAACCGCCTTATTAAATCTTCTACATAAAGCAGAGTTTGCTGGA
ATGCTTCCCGTTTTGGATATGGTCCATTTCGGAGTTACCATTTTGCGCCCCTTAATTTTCACTCCCGAATTCTGGATTCG
CAAGTTCGCTAAGGAAAACGGCTTCGCAAGAGTCACTTGCCGTTGTCCCGTGGTTTCATTAAGAAGCAAAGCGGAACAAA
GTTTAAAGTTATTAGAAGAGGTATTCCCTTTAGCACGTCATAATATCGCTTTGGCAATTCAAGAACATGGGTCATCCAAA
TCACAAAAAATTTGA

Upstream 100 bases:

>100_bases
AAACTTTATGCCAGCCTATTCACCTGAACTATAAGTTTCTGGATTTTTAACAGCGATTTCTTAAGAATAATATTCCTTTA
ACCATCCATTCATTGTTTTC

Downstream 100 bases:

>100_bases
GAGACACTTTGTTATTAATTAATTTTTAATATAAATAAGGAAGTAAAAGTTTACTTGGTTCTCATGAATAAAAGATTAAA
GATAATTCTAACTAATGATG

Product: PP-loop superfamily ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MSTLLLNPPWMKAGKRIESLVRKALYTHTMLANHRKIVVALSGGKDSLTLLLMLKAISGRGFPDLDLHAVNIGGKYSCGA
EVNKPYLTRICDQLCIPFRTIPSPYAPETPECYPCSQARRRLLFQAAKEIGASAIAFGHHRDDLVQTALLNLLHKAEFAG
MLPVLDMVHFGVTILRPLIFTPEFWIRKFAKENGFARVTCRCPVVSLRSKAEQSLKLLEEVFPLARHNIALAIQEHGSSK
SQKI

Sequences:

>Translated_244_residues
MSTLLLNPPWMKAGKRIESLVRKALYTHTMLANHRKIVVALSGGKDSLTLLLMLKAISGRGFPDLDLHAVNIGGKYSCGA
EVNKPYLTRICDQLCIPFRTIPSPYAPETPECYPCSQARRRLLFQAAKEIGASAIAFGHHRDDLVQTALLNLLHKAEFAG
MLPVLDMVHFGVTILRPLIFTPEFWIRKFAKENGFARVTCRCPVVSLRSKAEQSLKLLEEVFPLARHNIALAIQEHGSSK
SQKI
>Mature_243_residues
STLLLNPPWMKAGKRIESLVRKALYTHTMLANHRKIVVALSGGKDSLTLLLMLKAISGRGFPDLDLHAVNIGGKYSCGAE
VNKPYLTRICDQLCIPFRTIPSPYAPETPECYPCSQARRRLLFQAAKEIGASAIAFGHHRDDLVQTALLNLLHKAEFAGM
LPVLDMVHFGVTILRPLIFTPEFWIRKFAKENGFARVTCRCPVVSLRSKAEQSLKLLEEVFPLARHNIALAIQEHGSSKS
QKI

Specific function: Required for the thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32) [H]

COG id: COG0037

COG function: function code D; Predicted ATPase of the PP-loop superfamily implicated in cell cycle control

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TtcA family [H]

Homologues:

Organism=Escherichia coli, GI1787606, Length=194, Percent_Identity=33.5051546391753, Blast_Score=99, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI193211090, Length=218, Percent_Identity=27.0642201834862, Blast_Score=67, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012089
- InterPro:   IPR014729
- InterPro:   IPR011063 [H]

Pfam domain/function: PF01171 ATP_bind_3 [H]

EC number: NA

Molecular weight: Translated: 27198; Mature: 27067

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLLLNPPWMKAGKRIESLVRKALYTHTMLANHRKIVVALSGGKDSLTLLLMLKAISGR
CCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCC
GFPDLDLHAVNIGGKYSCGAEVNKPYLTRICDQLCIPFRTIPSPYAPETPECYPCSQARR
CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
RLLFQAAKEIGASAIAFGHHRDDLVQTALLNLLHKAEFAGMLPVLDMVHFGVTILRPLIF
HHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TPEFWIRKFAKENGFARVTCRCPVVSLRSKAEQSLKLLEEVFPLARHNIALAIQEHGSSK
CHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCC
SQKI
CCCC
>Mature Secondary Structure 
STLLLNPPWMKAGKRIESLVRKALYTHTMLANHRKIVVALSGGKDSLTLLLMLKAISGR
CCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCC
GFPDLDLHAVNIGGKYSCGAEVNKPYLTRICDQLCIPFRTIPSPYAPETPECYPCSQARR
CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
RLLFQAAKEIGASAIAFGHHRDDLVQTALLNLLHKAEFAGMLPVLDMVHFGVTILRPLIF
HHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TPEFWIRKFAKENGFARVTCRCPVVSLRSKAEQSLKLLEEVFPLARHNIALAIQEHGSSK
CHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCC
SQKI
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA