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The map label for this gene is cydA

Identifier: 15835638

GI number: 15835638

Start: 129834

End: 131180

Strand: Direct

Name: cydA

Synonym: CPj0102

Alternate gene names: 15835638

Gene position: 129834-131180 (Clockwise)

Preceding gene: 15835635

Following gene: 15835639

Centisome position: 10.59

GC content: 38.01

Gene sequence:

>1347_bases
ATGGATGCGCTTATCTTATCTAGAATACAATTTGGATTGTTTATAACTTTTCATTACCTTTTTGTGCCTCTGAGTATGGG
TTTGAGCATGATGCTTGTGATCATGGAAGGACTCTACTTGGTTACAAAAAAGCAAATTTATAAGCAAATGACATGGTTTT
GGGTTGGGATTTTTGCCCTAACATTTGTTCTTGGAGTCGTTACTGGAATCATGCAGATATTTTCTTTCGGTTCTAACTGG
GCAAATTTCTCAGAATATACAGGAAATATTTTCGGCACCTTATTAGGTAGTGAAGGTGTTTTTGCTTTTTTCTTGGAATC
AGGATTTTTAGGAATTTTGTTATTTGGTCGCCACAAGGTCTCTAAGAAAATGCATTTCTTTTCTACGTGCATGGTAGCTT
TAGGAGCTCATATGAGTGCCTTTTGGATTATTTGTGCGAATTCTTGGATGCAGACTCCTTCAGGTTACGAGATGGTGATG
CATAAAGGAAAACTCATCCCTGCTTTAACCTCCTTCTGGGGAGTGGTCTTCTCTCCAACAACTATAGATCGCTTTATTCA
TGCAGTCTTAGGAACTTGGCTGTCAGGAGTTTTTCTTGTTATAAGTGTATCAGCATATTATTTATGGAAAAAACGTCATC
ATGAGTTTGCTAAACAAGGAATGAAGATAGGGACGATTTGTGCAGTTATAGTCTTAGTTTTACAATTGTGGTCTGCAGAT
GTAACGGCTAGGGGAGTTGCTAAAAATCAGCCTGCGAAGTTAGCAGCTTTTGAAGGTATCTTCAAAACCGAAGAATATAC
TCCTATATGGGCTTTTGGTTATGTAGACATGGAAAAAGAACGGGTTATAGGGCTGCCTATTCCAGGAGCACTTTCTTTTC
TTGTTCATAGAAATATAAAAACCCCAGTCACTGGTTTAGATCAAATTCCTAGAGATGAATGGCCTAATGTACAGGCTGTC
TTTCAGCTGTATCACCTGATGATCATGTTGTGGGGGGTTATGGTCGCTTTAACTTTGATTTCCTGGTCTGCATATAAGGG
ATGGCGATGGGCGTTAAAACCCTTTTTCTTAGTCATTTTAACTTTTTCTGTCTTATTACCAGAAATTTGTAACGAGTGTG
GTTGGTGCGCTGCTGAAATGGGAAGACAACCTTGGGTAGTTCAAGGATTATTAAAAACCAAAGATGCGGTGTCTCCTATA
GTGCAGGCGAATCAAATTGTACAATCTTTGGTAATATTTAGCTTAGTATTCATTGCTCTTCTGACTCTCTTTATTACTGT
ACTTTGTAAAAAAATAAAGCATGGTCCTGAAGAGGAAAATGATCTTACAGAATTTGAAGTGAAATAG

Upstream 100 bases:

>100_bases
TACGAACAAAAAGGTTAACAGCAAAGTATTTTGTAGTTGCAATACTTTGTTTCATCGTTCACATTACAGTTTCTAATTTT
ATATACAATTCTGGAAGTTT

Downstream 100 bases:

>100_bases
AGGTATTTTTATGGAACTTTCTCTAACAAGCCTTTTACCACTTGCGTGGTATGTAATTCTTGGAGTTGCTGTCTTTGCGT
ATTCTTTTGGCGACGGTTTT

Product: cytochrome oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MDALILSRIQFGLFITFHYLFVPLSMGLSMMLVIMEGLYLVTKKQIYKQMTWFWVGIFALTFVLGVVTGIMQIFSFGSNW
ANFSEYTGNIFGTLLGSEGVFAFFLESGFLGILLFGRHKVSKKMHFFSTCMVALGAHMSAFWIICANSWMQTPSGYEMVM
HKGKLIPALTSFWGVVFSPTTIDRFIHAVLGTWLSGVFLVISVSAYYLWKKRHHEFAKQGMKIGTICAVIVLVLQLWSAD
VTARGVAKNQPAKLAAFEGIFKTEEYTPIWAFGYVDMEKERVIGLPIPGALSFLVHRNIKTPVTGLDQIPRDEWPNVQAV
FQLYHLMIMLWGVMVALTLISWSAYKGWRWALKPFFLVILTFSVLLPEICNECGWCAAEMGRQPWVVQGLLKTKDAVSPI
VQANQIVQSLVIFSLVFIALLTLFITVLCKKIKHGPEEENDLTEFEVK

Sequences:

>Translated_448_residues
MDALILSRIQFGLFITFHYLFVPLSMGLSMMLVIMEGLYLVTKKQIYKQMTWFWVGIFALTFVLGVVTGIMQIFSFGSNW
ANFSEYTGNIFGTLLGSEGVFAFFLESGFLGILLFGRHKVSKKMHFFSTCMVALGAHMSAFWIICANSWMQTPSGYEMVM
HKGKLIPALTSFWGVVFSPTTIDRFIHAVLGTWLSGVFLVISVSAYYLWKKRHHEFAKQGMKIGTICAVIVLVLQLWSAD
VTARGVAKNQPAKLAAFEGIFKTEEYTPIWAFGYVDMEKERVIGLPIPGALSFLVHRNIKTPVTGLDQIPRDEWPNVQAV
FQLYHLMIMLWGVMVALTLISWSAYKGWRWALKPFFLVILTFSVLLPEICNECGWCAAEMGRQPWVVQGLLKTKDAVSPI
VQANQIVQSLVIFSLVFIALLTLFITVLCKKIKHGPEEENDLTEFEVK
>Mature_448_residues
MDALILSRIQFGLFITFHYLFVPLSMGLSMMLVIMEGLYLVTKKQIYKQMTWFWVGIFALTFVLGVVTGIMQIFSFGSNW
ANFSEYTGNIFGTLLGSEGVFAFFLESGFLGILLFGRHKVSKKMHFFSTCMVALGAHMSAFWIICANSWMQTPSGYEMVM
HKGKLIPALTSFWGVVFSPTTIDRFIHAVLGTWLSGVFLVISVSAYYLWKKRHHEFAKQGMKIGTICAVIVLVLQLWSAD
VTARGVAKNQPAKLAAFEGIFKTEEYTPIWAFGYVDMEKERVIGLPIPGALSFLVHRNIKTPVTGLDQIPRDEWPNVQAV
FQLYHLMIMLWGVMVALTLISWSAYKGWRWALKPFFLVILTFSVLLPEICNECGWCAAEMGRQPWVVQGLLKTKDAVSPI
VQANQIVQSLVIFSLVFIALLTLFITVLCKKIKHGPEEENDLTEFEVK

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=494, Percent_Identity=31.5789473684211, Blast_Score=236, Evalue=2e-63,
Organism=Escherichia coli, GI1787212, Length=319, Percent_Identity=38.5579937304075, Blast_Score=236, Evalue=2e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 50675; Mature: 50675

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]