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The map label for this gene is cydB

Identifier: 15835639

GI number: 15835639

Start: 131191

End: 132225

Strand: Direct

Name: cydB

Synonym: CPj0103

Alternate gene names: 15835639

Gene position: 131191-132225 (Clockwise)

Preceding gene: 15835638

Following gene: 15835642

Centisome position: 10.7

GC content: 39.61

Gene sequence:

>1035_bases
ATGGAACTTTCTCTAACAAGCCTTTTACCACTTGCGTGGTATGTAATTCTTGGAGTTGCTGTCTTTGCGTATTCTTTTGG
CGACGGTTTTGATCTTGGGCTCGGAGCTGTTTATCTTAAAGCTAAGGAGGATAAAGAACGTCGGATTCTTCTTAATTCCA
TAGGACCTGTATGGGACGGCAATGAGGTCTGGTTAGTGATCATTGTCGGTGGGTTATTTGCAGGATTTCCTGCATGCTAT
GCCACACTTCTCTCGATTTTCTATATGCCTATCTGGACTTTGGTACTCCTTTATATTTTTAGGGGATGTTCTTTAGAATT
CCGAAGTAAATCGGAATCAGTGTCTTGGAAAATATTTTGGGATATTATCTTTATTTGTTCTGGGACTGCCATCAGCTTTT
TCTTAGGCACGATTGTTGGGAATCTGATCCTTGGATTGCCTTTGTCTCCAGACACCTCTTATGCTTCTTTATCCTGGATT
TTATTTTTCCGTCCTTATGCAGCCTTATGTGGCGCTGTAGTTGCCAGTGCGTTTGCTATTCACGGTTCTTGCTTCGCATT
AATGAAGACTTCGGATTCTTTAAATGCTAGGATTGCTCAGCAATTTCCTTATATTCTTTCGTCCTTCCTTGTCTTCTATG
TTCTCTTCTTAGGAGCAAGTTTAATCTCTATTCCCAAGCGTTTTGATGCTTTCCCTACGTATCCACTCTTGATTTTGCTC
ATTGCTTTAACGAGCTGCTGCTGTGTTGCTGCTAAGACGAGCGTGTCTAAGAAACGTTATGGCTACGCATTTATTTATTC
TACACTGAACTTGTTGTCTCTCATTCTGTCGGCAGCTACCCTAACGTTCCCTAATATTCTTCTCTCTACTGTAGATCCAC
AGTATAGTTATACTATCTACAATAGCGCTGTTGAAACTAAAACGTTAAAAAGCCTTTTGATTATAGTGCTTATAGGCCTT
CCTTTCATCATTACTTATACGTGTTATATTTATCGTGTGTTTAGAGGAAAAACTAATTTTCCCTCTATATATTGA

Upstream 100 bases:

>100_bases
CTTCTGACTCTCTTTATTACTGTACTTTGTAAAAAAATAAAGCATGGTCCTGAAGAGGAAAATGATCTTACAGAATTTGA
AGTGAAATAGAGGTATTTTT

Downstream 100 bases:

>100_bases
GTTTCATTTAAAGAGTCCGAAGCCTTCATTCCATGAGGGTCGGATTTAGATTAAAGAGACTGTGATTGCGTATAGATCCA
AGAATGAATCGAAGAACAGA

Product: cytochrome oxidase subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MELSLTSLLPLAWYVILGVAVFAYSFGDGFDLGLGAVYLKAKEDKERRILLNSIGPVWDGNEVWLVIIVGGLFAGFPACY
ATLLSIFYMPIWTLVLLYIFRGCSLEFRSKSESVSWKIFWDIIFICSGTAISFFLGTIVGNLILGLPLSPDTSYASLSWI
LFFRPYAALCGAVVASAFAIHGSCFALMKTSDSLNARIAQQFPYILSSFLVFYVLFLGASLISIPKRFDAFPTYPLLILL
IALTSCCCVAAKTSVSKKRYGYAFIYSTLNLLSLILSAATLTFPNILLSTVDPQYSYTIYNSAVETKTLKSLLIIVLIGL
PFIITYTCYIYRVFRGKTNFPSIY

Sequences:

>Translated_344_residues
MELSLTSLLPLAWYVILGVAVFAYSFGDGFDLGLGAVYLKAKEDKERRILLNSIGPVWDGNEVWLVIIVGGLFAGFPACY
ATLLSIFYMPIWTLVLLYIFRGCSLEFRSKSESVSWKIFWDIIFICSGTAISFFLGTIVGNLILGLPLSPDTSYASLSWI
LFFRPYAALCGAVVASAFAIHGSCFALMKTSDSLNARIAQQFPYILSSFLVFYVLFLGASLISIPKRFDAFPTYPLLILL
IALTSCCCVAAKTSVSKKRYGYAFIYSTLNLLSLILSAATLTFPNILLSTVDPQYSYTIYNSAVETKTLKSLLIIVLIGL
PFIITYTCYIYRVFRGKTNFPSIY
>Mature_344_residues
MELSLTSLLPLAWYVILGVAVFAYSFGDGFDLGLGAVYLKAKEDKERRILLNSIGPVWDGNEVWLVIIVGGLFAGFPACY
ATLLSIFYMPIWTLVLLYIFRGCSLEFRSKSESVSWKIFWDIIFICSGTAISFFLGTIVGNLILGLPLSPDTSYASLSWI
LFFRPYAALCGAVVASAFAIHGSCFALMKTSDSLNARIAQQFPYILSSFLVFYVLFLGASLISIPKRFDAFPTYPLLILL
IALTSCCCVAAKTSVSKKRYGYAFIYSTLNLLSLILSAATLTFPNILLSTVDPQYSYTIYNSAVETKTLKSLLIIVLIGL
PFIITYTCYIYRVFRGKTNFPSIY

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787213, Length=357, Percent_Identity=28.0112044817927, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1786954, Length=368, Percent_Identity=25.8152173913043, Blast_Score=135, Evalue=6e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 38175; Mature: 38175

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELSLTSLLPLAWYVILGVAVFAYSFGDGFDLGLGAVYLKAKEDKERRILLNSIGPVWDG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCC
NEVWLVIIVGGLFAGFPACYATLLSIFYMPIWTLVLLYIFRGCSLEFRSKSESVSWKIFW
CCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHH
DIIFICSGTAISFFLGTIVGNLILGLPLSPDTSYASLSWILFFRPYAALCGAVVASAFAI
HHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGSCFALMKTSDSLNARIAQQFPYILSSFLVFYVLFLGASLISIPKRFDAFPTYPLLILL
HHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
IALTSCCCVAAKTSVSKKRYGYAFIYSTLNLLSLILSAATLTFPNILLSTVDPQYSYTIY
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
NSAVETKTLKSLLIIVLIGLPFIITYTCYIYRVFRGKTNFPSIY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MELSLTSLLPLAWYVILGVAVFAYSFGDGFDLGLGAVYLKAKEDKERRILLNSIGPVWDG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCC
NEVWLVIIVGGLFAGFPACYATLLSIFYMPIWTLVLLYIFRGCSLEFRSKSESVSWKIFW
CCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHH
DIIFICSGTAISFFLGTIVGNLILGLPLSPDTSYASLSWILFFRPYAALCGAVVASAFAI
HHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGSCFALMKTSDSLNARIAQQFPYILSSFLVFYVLFLGASLISIPKRFDAFPTYPLLILL
HHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
IALTSCCCVAAKTSVSKKRYGYAFIYSTLNLLSLILSAATLTFPNILLSTVDPQYSYTIY
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
NSAVETKTLKSLLIIVLIGLPFIITYTCYIYRVFRGKTNFPSIY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]