| Definition | Chlamydophila pneumoniae J138, complete genome. |
|---|---|
| Accession | NC_002491 |
| Length | 1,226,565 |
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The map label for this gene is pmp_3_2
Identifier: 15835551
GI number: 15835551
Start: 21537
End: 23855
Strand: Direct
Name: pmp_3_2
Synonym: CPj0015
Alternate gene names: 15835551
Gene position: 21537-23855 (Clockwise)
Preceding gene: 15835550
Following gene: 15835552
Centisome position: 1.76
GC content: 42.43
Gene sequence:
>2319_bases TTGCTCTTCAGCAAAAACTTTTCAACGGATAATGGCGGTGCTATCACCGCAAAAACTCTTTCATTAACAGGGACTACAAT GTCAGCTCTGTTTTCTGAAAATACCTCCTCAAAGAAAGGCGGAGCCATTCAGACTTCCGATGCCCTTACCATTACTGGAA ACCAAGGGGAAGTCTCTTTTTCTGACAATACTTCTTCGGATTCTGGAGCTGCAATTTTTACAGAAGCCTCGGTGACTATT TCTAATAATGCTAAAGTTTCCTTTATTGACAATAAGGTCACAGGAGCGAGCTCCTCAACAACGGGGGATATGTCAGGAGG TGCTATCTGTGCTTATAAAACTAGTACAGATACTAAGGTCACCCTCACTGGAAATCAGATGTTACTCTTCAGCAACAATA CATCGACAACAGCGGGAGGAGCTATCTATGTGAAAAAGCTCGAACTGGCTTCCGGAGGACTTACCCTATTCAGTAGAAAT AGTGTCAATGGAGGTACAGCTCCTAAAGGTGGAGCCATAGCTATCGAAGATAGTGGGGAATTGAGTTTATCCGCCGATAG TGGTGACATTGTCTTTTTAGGGAATACAGTCACTTCTACTACTCCTGGGACGAATAGAAGTAGTATCGACTTAGGAACGA GTGCAAAGATGACAGCTTTGCGTTCTGCTGCTGGTAGAGCCATCTACTTCTATGATCCCATAACTACAGGATCATCCACA ACAGTTACAGATGTCTTAAAAGTTAATGAGACTCCGGCAGATTCTGCACTACAATATACAGGGAACATCATCTTCACAGG AGAAAAGTTATCAGAGACAGAGGCCGCAGATTCTAAAAATCTTACTTCGAAGCTACTACAGCCTGTAACTCTTTCAGGAG GTACTCTATCTTTAAAACATGGAGTGACTCTGCAGACTCAGGCATTCACTCAACAGGCAGATTCTCGTCTCGAAATGGAC GTAGGAACTACTCTAGAACCTGCTGATACTAGCACCATAAACAATTTGGTCATTAACATCAGTTCTATAGACGGTGCAAA GAAGGCAAAAATAGAAACCAAAGCTACGTCAAAAAATCTGACTTTATCTGGAACCATCACTTTATTGGACCCGACGGGCA CGTTTTATGAAAATCATAGTTTAAGAAATCCTCAGTCCTACGACATCTTAGAGCTCAAAGCTTCTGGAACTGTAACAAGC ACCGCAGTGACTCCAGATCCTATAATGGGTGAGAAATTCCATTACGGCTATCAGGGAACTTGGGGCCCAATTGTTTGGGG GACAGGGGCTTCTACGACTGCAACCTTCAACTGGACTAAAACTGGCTATATTCCTAATCCCGAGCGTATCGGCTCTTTAG TCCCTAATAGCTTATGGAATGCATTTATAGATATTAGCTCTCTCCATTATCTTATGGAGACTGCAAACGAAGGGTTGCAG GGAGACCGTGCTTTTTGGTGTGCTGGATTATCTAACTTCTTCCATAAGGATAGTACAAAAACACGACGCGGGTTTCGCCA TTTGAGTGGCGGTTATGTCATAGGAGGAAACCTACATACTTGTTCAGATAAGATTCTTAGTGCTGCATTTTGTCAGCTCT TTGGAAGAGATAGAGACTACTTTGTAGCTAAGAATCAAGGTACAGTCTACGGAGGAACTCTCTATTACCAGCACAACGAA ACCTATATCTCTCTTCCTTGCAAACTACGGCCTTGTTCGTTGTCTTATGTTCCTACAGAGATTCCTGTTCTCTTTTCAGG AAACCTTAGCTACACCCATACGGATAACGATCTGAAAACCAAGTATACAACATATCCTACTGTTAAAGGAAGCTGGGGGA ATGATAGTTTCGCTTTAGAATTCGGTGGAAGAGCTCCGATTTGCTTAGATGAAAGTGCTCTATTTGAGCAGTACATGCCC TTCATGAAATTGCAGTTTGTCTATGCACATCAGGAAGGTTTTAAAGAACAGGGAACAGAAGCTCGTGAATTTGGAAGTAG CCGTCTTGTGAATCTTGCCTTACCTATCGGGATCCGATTTGATAAGGAATCAGACTGCCAAGATGCAACGTACAATCTAA CTCTTGGTTATACTGTGGATCTTGTTCGTAGTAACCCCGACTGTACGACAACACTGCGAATTAGCGGTGATTCTTGGAAA ACTTTCGGTACGAATTTGGCAAGACAAGCTTTAGTCCTTCGTGCAGGGAACCATTTTTGCTTTAACTCAAATTTTGAAGC CTTTAGCCAATTTTCTTTTGAATTGCGTGGGTCATCTCGCAATTACAATGTAGACTTAGGAGCAAAATACCAATTCTAA
Upstream 100 bases:
>100_bases CTTCGCTATCTTTTATTGCGTCTCCTGGAAGTTCGATAACTACCGGCAAAGGAGCCGTTAGCTGCTCTACGGGTAGCTTG AGTTTGACAAAAATGTCAGT
Downstream 100 bases:
>100_bases TGCGTTAGCTTTGGTAAAGAGCTCCATACATCGAAGGGAAAAGAGCTTTTAAGATTTCTTGAAGGCTCTTTTCGATTTCG ATTTCCATTTTAGTGTTTTG
Product: hypothetical protein
Products: NA
Alternate protein names: Outer membrane protein 5; Polymorphic membrane protein 10 [H]
Number of amino acids: Translated: 772; Mature: 772
Protein sequence:
>772_residues MLFSKNFSTDNGGAITAKTLSLTGTTMSALFSENTSSKKGGAIQTSDALTITGNQGEVSFSDNTSSDSGAAIFTEASVTI SNNAKVSFIDNKVTGASSSTTGDMSGGAICAYKTSTDTKVTLTGNQMLLFSNNTSTTAGGAIYVKKLELASGGLTLFSRN SVNGGTAPKGGAIAIEDSGELSLSADSGDIVFLGNTVTSTTPGTNRSSIDLGTSAKMTALRSAAGRAIYFYDPITTGSST TVTDVLKVNETPADSALQYTGNIIFTGEKLSETEAADSKNLTSKLLQPVTLSGGTLSLKHGVTLQTQAFTQQADSRLEMD VGTTLEPADTSTINNLVINISSIDGAKKAKIETKATSKNLTLSGTITLLDPTGTFYENHSLRNPQSYDILELKASGTVTS TAVTPDPIMGEKFHYGYQGTWGPIVWGTGASTTATFNWTKTGYIPNPERIGSLVPNSLWNAFIDISSLHYLMETANEGLQ GDRAFWCAGLSNFFHKDSTKTRRGFRHLSGGYVIGGNLHTCSDKILSAAFCQLFGRDRDYFVAKNQGTVYGGTLYYQHNE TYISLPCKLRPCSLSYVPTEIPVLFSGNLSYTHTDNDLKTKYTTYPTVKGSWGNDSFALEFGGRAPICLDESALFEQYMP FMKLQFVYAHQEGFKEQGTEAREFGSSRLVNLALPIGIRFDKESDCQDATYNLTLGYTVDLVRSNPDCTTTLRISGDSWK TFGTNLARQALVLRAGNHFCFNSNFEAFSQFSFELRGSSRNYNVDLGAKYQF
Sequences:
>Translated_772_residues MLFSKNFSTDNGGAITAKTLSLTGTTMSALFSENTSSKKGGAIQTSDALTITGNQGEVSFSDNTSSDSGAAIFTEASVTI SNNAKVSFIDNKVTGASSSTTGDMSGGAICAYKTSTDTKVTLTGNQMLLFSNNTSTTAGGAIYVKKLELASGGLTLFSRN SVNGGTAPKGGAIAIEDSGELSLSADSGDIVFLGNTVTSTTPGTNRSSIDLGTSAKMTALRSAAGRAIYFYDPITTGSST TVTDVLKVNETPADSALQYTGNIIFTGEKLSETEAADSKNLTSKLLQPVTLSGGTLSLKHGVTLQTQAFTQQADSRLEMD VGTTLEPADTSTINNLVINISSIDGAKKAKIETKATSKNLTLSGTITLLDPTGTFYENHSLRNPQSYDILELKASGTVTS TAVTPDPIMGEKFHYGYQGTWGPIVWGTGASTTATFNWTKTGYIPNPERIGSLVPNSLWNAFIDISSLHYLMETANEGLQ GDRAFWCAGLSNFFHKDSTKTRRGFRHLSGGYVIGGNLHTCSDKILSAAFCQLFGRDRDYFVAKNQGTVYGGTLYYQHNE TYISLPCKLRPCSLSYVPTEIPVLFSGNLSYTHTDNDLKTKYTTYPTVKGSWGNDSFALEFGGRAPICLDESALFEQYMP FMKLQFVYAHQEGFKEQGTEAREFGSSRLVNLALPIGIRFDKESDCQDATYNLTLGYTVDLVRSNPDCTTTLRISGDSWK TFGTNLARQALVLRAGNHFCFNSNFEAFSQFSFELRGSSRNYNVDLGAKYQF >Mature_772_residues MLFSKNFSTDNGGAITAKTLSLTGTTMSALFSENTSSKKGGAIQTSDALTITGNQGEVSFSDNTSSDSGAAIFTEASVTI SNNAKVSFIDNKVTGASSSTTGDMSGGAICAYKTSTDTKVTLTGNQMLLFSNNTSTTAGGAIYVKKLELASGGLTLFSRN SVNGGTAPKGGAIAIEDSGELSLSADSGDIVFLGNTVTSTTPGTNRSSIDLGTSAKMTALRSAAGRAIYFYDPITTGSST TVTDVLKVNETPADSALQYTGNIIFTGEKLSETEAADSKNLTSKLLQPVTLSGGTLSLKHGVTLQTQAFTQQADSRLEMD VGTTLEPADTSTINNLVINISSIDGAKKAKIETKATSKNLTLSGTITLLDPTGTFYENHSLRNPQSYDILELKASGTVTS TAVTPDPIMGEKFHYGYQGTWGPIVWGTGASTTATFNWTKTGYIPNPERIGSLVPNSLWNAFIDISSLHYLMETANEGLQ GDRAFWCAGLSNFFHKDSTKTRRGFRHLSGGYVIGGNLHTCSDKILSAAFCQLFGRDRDYFVAKNQGTVYGGTLYYQHNE TYISLPCKLRPCSLSYVPTEIPVLFSGNLSYTHTDNDLKTKYTTYPTVKGSWGNDSFALEFGGRAPICLDESALFEQYMP FMKLQFVYAHQEGFKEQGTEAREFGSSRLVNLALPIGIRFDKESDCQDATYNLTLGYTVDLVRSNPDCTTTLRISGDSWK TFGTNLARQALVLRAGNHFCFNSNFEAFSQFSFELRGSSRNYNVDLGAKYQF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted, cell wall. Cell outer membrane; Peripheral membrane protein; Extracellular side (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005546 - InterPro: IPR003368 - InterPro: IPR006315 - InterPro: IPR006626 - InterPro: IPR011427 [H]
Pfam domain/function: PF03797 Autotransporter; PF02415 Chlam_PMP; PF07548 ChlamPMP_M [H]
EC number: NA
Molecular weight: Translated: 82932; Mature: 82932
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFSKNFSTDNGGAITAKTLSLTGTTMSALFSENTSSKKGGAIQTSDALTITGNQGEVSF CCCCCCCCCCCCCEEEEEEEEECCCHHHHHHCCCCCCCCCCEEEECCEEEEECCCCEEEE SDNTSSDSGAAIFTEASVTISNNAKVSFIDNKVTGASSSTTGDMSGGAICAYKTSTDTKV CCCCCCCCCEEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEE TLTGNQMLLFSNNTSTTAGGAIYVKKLELASGGLTLFSRNSVNGGTAPKGGAIAIEDSGE EEECCEEEEEECCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCCCCEEEEECCCC LSLSADSGDIVFLGNTVTSTTPGTNRSSIDLGTSAKMTALRSAAGRAIYFYDPITTGSST EEEECCCCCEEEECCCEECCCCCCCCCEEECCCCHHHHHHHHHCCCEEEEECCCCCCCCC TVTDVLKVNETPADSALQYTGNIIFTGEKLSETEAADSKNLTSKLLQPVTLSGGTLSLKH EEEEEEEECCCCCCCEEEECCCEEEECCCCCCCCCCCCCHHHHHHCCCEEECCCEEEEEC GVTLQTQAFTQQADSRLEMDVGTTLEPADTSTINNLVINISSIDGAKKAKIETKATSKNL CEEEEEHHHHHHCCCEEEECCCCEECCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCE TLSGTITLLDPTGTFYENHSLRNPQSYDILELKASGTVTSTAVTPDPIMGEKFHYGYQGT EEEEEEEEECCCCCEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCEECCCCCC WGPIVWGTGASTTATFNWTKTGYIPNPERIGSLVPNSLWNAFIDISSLHYLMETANEGLQ CCCEEECCCCCCEEEEEEEECCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC GDRAFWCAGLSNFFHKDSTKTRRGFRHLSGGYVIGGNLHTCSDKILSAAFCQLFGRDRDY CCCEEEEECHHHHHHCCCCHHHHHHHHCCCCEEECCCEEHHHHHHHHHHHHHHHCCCCCE FVAKNQGTVYGGTLYYQHNETYISLPCKLRPCSLSYVPTEIPVLFSGNLSYTHTDNDLKT EEECCCCEEEEEEEEEEECCEEEEECCEECCCCCEECCCCCCEEEECCEEEEECCCCCEE KYTTYPTVKGSWGNDSFALEFGGRAPICLDESALFEQYMPFMKLQFVYAHQEGFKEQGTE EEEECCEEECCCCCCEEEEEECCCCCEEECHHHHHHHHCCCEEEEEEEEHHHCHHHCCCH AREFGSSRLVNLALPIGIRFDKESDCQDATYNLTLGYTVDLVRSNPDCTTTLRISGDSWK HHHCCCCEEEEEEEEEEEEECCCCCCCCCEEEEEEEEEEEEEECCCCCEEEEEECCCCCC TFGTNLARQALVLRAGNHFCFNSNFEAFSQFSFELRGSSRNYNVDLGAKYQF HHHHHHHHHEEEEECCCEEEECCCCHHHEEEEEEEECCCCCEEEEECEEECC >Mature Secondary Structure MLFSKNFSTDNGGAITAKTLSLTGTTMSALFSENTSSKKGGAIQTSDALTITGNQGEVSF CCCCCCCCCCCCCEEEEEEEEECCCHHHHHHCCCCCCCCCCEEEECCEEEEECCCCEEEE SDNTSSDSGAAIFTEASVTISNNAKVSFIDNKVTGASSSTTGDMSGGAICAYKTSTDTKV CCCCCCCCCEEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEE TLTGNQMLLFSNNTSTTAGGAIYVKKLELASGGLTLFSRNSVNGGTAPKGGAIAIEDSGE EEECCEEEEEECCCCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCCCCCCEEEEECCCC LSLSADSGDIVFLGNTVTSTTPGTNRSSIDLGTSAKMTALRSAAGRAIYFYDPITTGSST EEEECCCCCEEEECCCEECCCCCCCCCEEECCCCHHHHHHHHHCCCEEEEECCCCCCCCC TVTDVLKVNETPADSALQYTGNIIFTGEKLSETEAADSKNLTSKLLQPVTLSGGTLSLKH EEEEEEEECCCCCCCEEEECCCEEEECCCCCCCCCCCCCHHHHHHCCCEEECCCEEEEEC GVTLQTQAFTQQADSRLEMDVGTTLEPADTSTINNLVINISSIDGAKKAKIETKATSKNL CEEEEEHHHHHHCCCEEEECCCCEECCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCE TLSGTITLLDPTGTFYENHSLRNPQSYDILELKASGTVTSTAVTPDPIMGEKFHYGYQGT EEEEEEEEECCCCCEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCEECCCCCC WGPIVWGTGASTTATFNWTKTGYIPNPERIGSLVPNSLWNAFIDISSLHYLMETANEGLQ CCCEEECCCCCCEEEEEEEECCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC GDRAFWCAGLSNFFHKDSTKTRRGFRHLSGGYVIGGNLHTCSDKILSAAFCQLFGRDRDY CCCEEEEECHHHHHHCCCCHHHHHHHHCCCCEEECCCEEHHHHHHHHHHHHHHHCCCCCE FVAKNQGTVYGGTLYYQHNETYISLPCKLRPCSLSYVPTEIPVLFSGNLSYTHTDNDLKT EEECCCCEEEEEEEEEEECCEEEEECCEECCCCCEECCCCCCEEEECCEEEEECCCCCEE KYTTYPTVKGSWGNDSFALEFGGRAPICLDESALFEQYMPFMKLQFVYAHQEGFKEQGTE EEEECCEEECCCCCCEEEEEECCCCCEEECHHHHHHHHCCCEEEEEEEEHHHCHHHCCCH AREFGSSRLVNLALPIGIRFDKESDCQDATYNLTLGYTVDLVRSNPDCTTTLRISGDSWK HHHCCCCEEEEEEEEEEEEECCCCCCCCCEEEEEEEEEEEEEECCCCCEEEEEECCCCCC TFGTNLARQALVLRAGNHFCFNSNFEAFSQFSFELRGSSRNYNVDLGAKYQF HHHHHHHHHEEEEECCCEEEECCCCHHHEEEEEEEECCCCCEEEEECEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10539856; 10684935; 10871362; 9864239 [H]