Click here to switch to the map view.

The map label for this gene is yabF [H]

Identifier: 15594971

GI number: 15594971

Start: 656998

End: 657543

Strand: Reverse

Name: yabF [H]

Synonym: BB0626

Alternate gene names: 15594971

Gene position: 657543-656998 (Counterclockwise)

Preceding gene: 15594972

Following gene: 15594968

Centisome position: 72.2

GC content: 26.56

Gene sequence:

>546_bases
TTGGAAAAAATAAAAGAAATAATTGTAGTTGAGGGAAAAGATGATCTTAAAAGAATCAAAGAATCTTTTGACTGCACAGT
AATAGAAACAAAAGGATTTGCTTTAAAAATTGAAACTATTAAGTTGTTAAAAAAAGCCTTAAAATACAAAGGAATAATAA
TCTTAACAGACAGCGATAAATCTGGAAATATTATTAGACAAAAAATAGTCAAATATCTGGGAGAAAATAATAAAATCAAA
CATGCATATCTTAATACTAAAGACACTGAGGTTGAATCAGTAAATAAAACAGAAATAATAAAAATACTTAAGGGGGTTGG
AACTTTATCTAAAGATAATCAAAAAGATTTATTAAAATTAAGCGATTTGTTAGAACTTGGCATAATAGGAGAAAACTCAA
AAGAAAATAGACAAAAAATACAAAAACACTTTTGTTTGGGGGATGGAAATAGTAAAAAACTCTTAGAAAGGCTGAATTAC
TTTAAAATAAAAAAAACAGACCTAAAAAACCAATTGGCTTTAACTAACTCCCCCAGAAGGACTTGA

Upstream 100 bases:

>100_bases
CAATGTGGGCAATGCATTCCCTGCGCGAAACAGTATCAATAGCTGACCACATAGAAGCAATTAAATTGCTAAGGGCTTTC
TTTGAAAAAGGAATTTAAAA

Downstream 100 bases:

>100_bases
ACCTCCGACCTAGTGGTTAACAGCCACCCGCTCTACCACTGAGCTATAGGGGAAATTGAACACTAAAAATATTATCTTAA
ATTTAAAAATTTTTGTCAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MEKIKEIIVVEGKDDLKRIKESFDCTVIETKGFALKIETIKLLKKALKYKGIIILTDSDKSGNIIRQKIVKYLGENNKIK
HAYLNTKDTEVESVNKTEIIKILKGVGTLSKDNQKDLLKLSDLLELGIIGENSKENRQKIQKHFCLGDGNSKKLLERLNY
FKIKKTDLKNQLALTNSPRRT

Sequences:

>Translated_181_residues
MEKIKEIIVVEGKDDLKRIKESFDCTVIETKGFALKIETIKLLKKALKYKGIIILTDSDKSGNIIRQKIVKYLGENNKIK
HAYLNTKDTEVESVNKTEIIKILKGVGTLSKDNQKDLLKLSDLLELGIIGENSKENRQKIQKHFCLGDGNSKKLLERLNY
FKIKKTDLKNQLALTNSPRRT
>Mature_181_residues
MEKIKEIIVVEGKDDLKRIKESFDCTVIETKGFALKIETIKLLKKALKYKGIIILTDSDKSGNIIRQKIVKYLGENNKIK
HAYLNTKDTEVESVNKTEIIKILKGVGTLSKDNQKDLLKLSDLLELGIIGENSKENRQKIQKHFCLGDGNSKKLLERLNY
FKIKKTDLKNQLALTNSPRRT

Specific function: Unknown

COG id: COG1658

COG function: function code L; Small primase-like proteins (Toprim domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004466
- InterPro:   IPR006171 [H]

Pfam domain/function: PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 20700; Mature: 20700

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKIKEIIVVEGKDDLKRIKESFDCTVIETKGFALKIETIKLLKKALKYKGIIILTDSDK
CCCCCEEEEEECCHHHHHHHHHCCEEEEECCCCEEEHHHHHHHHHHHHHCCEEEEECCCC
SGNIIRQKIVKYLGENNKIKHAYLNTKDTEVESVNKTEIIKILKGVGTLSKDNQKDLLKL
CCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCHHHHHHHHHHCCCCCCCCHHHHHHH
SDLLELGIIGENSKENRQKIQKHFCLGDGNSKKLLERLNYFKIKKTDLKNQLALTNSPRR
HHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHEEEHHCCCCCEEECCCCCC
T
C
>Mature Secondary Structure
MEKIKEIIVVEGKDDLKRIKESFDCTVIETKGFALKIETIKLLKKALKYKGIIILTDSDK
CCCCCEEEEEECCHHHHHHHHHCCEEEEECCCCEEEHHHHHHHHHHHHHCCEEEEECCCC
SGNIIRQKIVKYLGENNKIKHAYLNTKDTEVESVNKTEIIKILKGVGTLSKDNQKDLLKL
CCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCHHHHHHHHHHCCCCCCCCHHHHHHH
SDLLELGIIGENSKENRQKIQKHFCLGDGNSKKLLERLNYFKIKKTDLKNQLALTNSPRR
HHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHEEEHHCCCCCEEECCCCCC
T
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]