Click here to switch to the map view.

The map label for this gene is yfjD [H]

Identifier: 15594547

GI number: 15594547

Start: 202850

End: 204088

Strand: Direct

Name: yfjD [H]

Synonym: BB0202

Alternate gene names: 15594547

Gene position: 202850-204088 (Clockwise)

Preceding gene: 15594544

Following gene: 15594548

Centisome position: 22.27

GC content: 28.73

Gene sequence:

>1239_bases
ATGCTAGAATTAATCATAATACTACTATTTATAATATTATCTGCTATTTTCTCAGCATCTGAAACAGCTTATACTTCATT
AAGCATAATTCAGATACAAGACATAAGAAAAAAGGGGAAATCGGGAATATCCGTGTACAATTTGGTTCAATCTCCTTCAA
AATTAATTACTACTATTCTTATCGGCAACAATATATCAAACATTGTAGCAAGCACACTTACAACAAAATTTGTACTTGAA
AAATACGGAAACAGCGCACTTGCAATATCAACGGGCCTAATAACAATAATCGTTCTAATTTTTGCCGAAATACTTCCAAA
ACAAATTGCAATTTTAAATAATGAAATAATTGCCCTATCTACTTCATTTTTTTTAAAGCCATTAATTTTTATATTTACTC
CACTAATATATATAATAAACAAAATCATAAAAAAAATATTAAATCTCTTTAAAGTTAAGACTAGCTCCCAAATGACTAAA
GAGAGCATAAAAAATATGCTCTCTTTAGCAGGAAGTTTAGGAATTTTAAAAAATGACTCTAGAATATTTATGCAAAAAAT
GTTAGATATAGATCAAGTAAGAGCTTCTGAAATCATGACCCACAGAACAGGGGTTTTTTCACTCTCAAGCTCATCAAAGC
TAAAAGATGTAATCAAATTGATCAAAGAAGAAGGATACTCTAGAATTCCTATATACAAAGGACAAAGCAGAGAACAGATA
ATTGGGATTTTAATAGCCAAAGACCTCATAGAAGTCAATAAAAAAGATATGAATAAAAACGTTTCTCAATTTATTAAACC
AGCTGTATTTGTACAACAAAACAAAAGGATAAAAGACATACTAGATATTATGAGGAAAAAACAAAAAATAATGGCAATCG
TAATCGATGAATATGGTGGTTTTTCAGGGATACTTACAATAGAAGACATAGTAGAAAAAATTTTTGGAGCAATATCTGAC
GAATACGACATTAAAGAGGAAAAGCCTCTGATTACTCAAATCAACGACAATACTTACTCAATACTTGGAGAAACTACTTT
TGACGAGATTGAAGAGGCAATTGGGATATCCATTAAACATAAAGAATATACAAATACAATTGGTGGATACTTAATAGATC
TGCTTGACAAAATACCAACAAAAAACGAAACCGTAAAAACAAATGATGGAGAATATTTTATTAAGGAAATTCAGAATAAT
AAAATTGAAACAATAACTTTTATCAAATCTAAAAAGTAG

Upstream 100 bases:

>100_bases
ATTCCGGTCAGCGCCTTCTAAGATCAAGTCAAAAATATTTTTATACTTAAGGACATAACTTAAAGCATTTTTATTAAAGA
TAAATTAAAATAATACATAT

Downstream 100 bases:

>100_bases
TGACAAAATTCGCTTACTAAAAATAATTTAAAACATTAGGAGAAGCAGATGTTTGACATAAAACAAATTTTTAATAAAAC
TTATGAATATTTAATAATTA

Product: hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MLELIIILLFIILSAIFSASETAYTSLSIIQIQDIRKKGKSGISVYNLVQSPSKLITTILIGNNISNIVASTLTTKFVLE
KYGNSALAISTGLITIIVLIFAEILPKQIAILNNEIIALSTSFFLKPLIFIFTPLIYIINKIIKKILNLFKVKTSSQMTK
ESIKNMLSLAGSLGILKNDSRIFMQKMLDIDQVRASEIMTHRTGVFSLSSSSKLKDVIKLIKEEGYSRIPIYKGQSREQI
IGILIAKDLIEVNKKDMNKNVSQFIKPAVFVQQNKRIKDILDIMRKKQKIMAIVIDEYGGFSGILTIEDIVEKIFGAISD
EYDIKEEKPLITQINDNTYSILGETTFDEIEEAIGISIKHKEYTNTIGGYLIDLLDKIPTKNETVKTNDGEYFIKEIQNN
KIETITFIKSKK

Sequences:

>Translated_412_residues
MLELIIILLFIILSAIFSASETAYTSLSIIQIQDIRKKGKSGISVYNLVQSPSKLITTILIGNNISNIVASTLTTKFVLE
KYGNSALAISTGLITIIVLIFAEILPKQIAILNNEIIALSTSFFLKPLIFIFTPLIYIINKIIKKILNLFKVKTSSQMTK
ESIKNMLSLAGSLGILKNDSRIFMQKMLDIDQVRASEIMTHRTGVFSLSSSSKLKDVIKLIKEEGYSRIPIYKGQSREQI
IGILIAKDLIEVNKKDMNKNVSQFIKPAVFVQQNKRIKDILDIMRKKQKIMAIVIDEYGGFSGILTIEDIVEKIFGAISD
EYDIKEEKPLITQINDNTYSILGETTFDEIEEAIGISIKHKEYTNTIGGYLIDLLDKIPTKNETVKTNDGEYFIKEIQNN
KIETITFIKSKK
>Mature_412_residues
MLELIIILLFIILSAIFSASETAYTSLSIIQIQDIRKKGKSGISVYNLVQSPSKLITTILIGNNISNIVASTLTTKFVLE
KYGNSALAISTGLITIIVLIFAEILPKQIAILNNEIIALSTSFFLKPLIFIFTPLIYIINKIIKKILNLFKVKTSSQMTK
ESIKNMLSLAGSLGILKNDSRIFMQKMLDIDQVRASEIMTHRTGVFSLSSSSKLKDVIKLIKEEGYSRIPIYKGQSREQI
IGILIAKDLIEVNKKDMNKNVSQFIKPAVFVQQNKRIKDILDIMRKKQKIMAIVIDEYGGFSGILTIEDIVEKIFGAISD
EYDIKEEKPLITQINDNTYSILGETTFDEIEEAIGISIKHKEYTNTIGGYLIDLLDKIPTKNETVKTNDGEYFIKEIQNN
KIETITFIKSKK

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=333, Percent_Identity=27.9279279279279, Blast_Score=136, Evalue=4e-32,
Organism=Homo sapiens, GI40068055, Length=342, Percent_Identity=25.1461988304094, Blast_Score=87, Evalue=4e-17,
Organism=Homo sapiens, GI40068053, Length=342, Percent_Identity=25.1461988304094, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI94681046, Length=307, Percent_Identity=25.0814332247557, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI40068051, Length=297, Percent_Identity=23.9057239057239, Blast_Score=75, Evalue=2e-13,
Organism=Escherichia coli, GI145693175, Length=403, Percent_Identity=28.287841191067, Blast_Score=174, Evalue=8e-45,
Organism=Escherichia coli, GI1786879, Length=225, Percent_Identity=30.6666666666667, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1790664, Length=429, Percent_Identity=21.6783216783217, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI87082033, Length=262, Percent_Identity=21.3740458015267, Blast_Score=94, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI71980512, Length=356, Percent_Identity=26.9662921348315, Blast_Score=81, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17539402, Length=347, Percent_Identity=27.0893371757925, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17554630, Length=353, Percent_Identity=23.2294617563739, Blast_Score=69, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6324512, Length=282, Percent_Identity=28.0141843971631, Blast_Score=89, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 46392; Mature: 46392

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELIIILLFIILSAIFSASETAYTSLSIIQIQDIRKKGKSGISVYNLVQSPSKLITTIL
CHHHHHHHHHHHHHHHHCCCCHHHHEEEEEEHHHHHHCCCCCCHHHHHHHCHHHHHHHHH
IGNNISNIVASTLTTKFVLEKYGNSALAISTGLITIIVLIFAEILPKQIAILNNEIIALS
CCCCHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
TSFFLKPLIFIFTPLIYIINKIIKKILNLFKVKTSSQMTKESIKNMLSLAGSLGILKNDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCH
RIFMQKMLDIDQVRASEIMTHRTGVFSLSSSSKLKDVIKLIKEEGYSRIPIYKGQSREQI
HHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHH
IGILIAKDLIEVNKKDMNKNVSQFIKPAVFVQQNKRIKDILDIMRKKQKIMAIVIDEYGG
HHHHHHHHHHHHCHHHHCCCHHHHHCHHHHHHCCCCHHHHHHHHHHHHHEEEEEEECCCC
FSGILTIEDIVEKIFGAISDEYDIKEEKPLITQINDNTYSILGETTFDEIEEAIGISIKH
CCCEEEHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEECCCCHHHHHHHHCCEEEC
KEYTNTIGGYLIDLLDKIPTKNETVKTNDGEYFIKEIQNNKIETITFIKSKK
HHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHCCCCEEEEEEEECCC
>Mature Secondary Structure
MLELIIILLFIILSAIFSASETAYTSLSIIQIQDIRKKGKSGISVYNLVQSPSKLITTIL
CHHHHHHHHHHHHHHHHCCCCHHHHEEEEEEHHHHHHCCCCCCHHHHHHHCHHHHHHHHH
IGNNISNIVASTLTTKFVLEKYGNSALAISTGLITIIVLIFAEILPKQIAILNNEIIALS
CCCCHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
TSFFLKPLIFIFTPLIYIINKIIKKILNLFKVKTSSQMTKESIKNMLSLAGSLGILKNDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCH
RIFMQKMLDIDQVRASEIMTHRTGVFSLSSSSKLKDVIKLIKEEGYSRIPIYKGQSREQI
HHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHCCCCCCCEECCCCHHHH
IGILIAKDLIEVNKKDMNKNVSQFIKPAVFVQQNKRIKDILDIMRKKQKIMAIVIDEYGG
HHHHHHHHHHHHCHHHHCCCHHHHHCHHHHHHCCCCHHHHHHHHHHHHHEEEEEEECCCC
FSGILTIEDIVEKIFGAISDEYDIKEEKPLITQINDNTYSILGETTFDEIEEAIGISIKH
CCCEEEHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCEEEEECCCCHHHHHHHHCCEEEC
KEYTNTIGGYLIDLLDKIPTKNETVKTNDGEYFIKEIQNNKIETITFIKSKK
HHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]