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The map label for this gene is ycfH [C]

Identifier: 15594539

GI number: 15594539

Start: 191518

End: 192327

Strand: Reverse

Name: ycfH [C]

Synonym: BB0194

Alternate gene names: 15594539

Gene position: 192327-191518 (Counterclockwise)

Preceding gene: 15594540

Following gene: 15594535

Centisome position: 21.12

GC content: 28.02

Gene sequence:

>810_bases
ATGATGGATTCTTTACTTGAAACTGAAAAATCTATTTTTTTTGATAAATTAATAGATACTCATGTTCATTTTTATGAATT
AAAGAAAAGATCTTTGGATGTCAATTACATTATTAATGAATGTTTTAAAAACGGCTTTTCTTATTTTCTTGATGTTGGAT
TGCATCCTAGTGATTTTAATGACAGAAAAGATCTTTTAAGCCCTTATTCCAATGTGTTTTTAACAGCAGGTATTCATCCT
TTAAATTTAAGTGATCATTTTAAAGATGATATTAAACAGCTTGAGAAAATTTTGATTAGTGAAAATGTTGTTGCCGTTGG
GGAGATGGGTCTTGATTATTTTAAAGCAGATAACAAGAAATTTCAAATTAAAGCTCTTGAAGAGCAATTGTATTTGGCTG
ATAAATATAAAAGGCCAGTTATTTTGCATATAAGAGATGCCTATGATGATGTCTATAATATTGTAAGGTCTTTAAATTTT
TTAAATAGGGGTATATTGCATTGTTATTCAGGAACTTATGAGCATGCTAAAAAATTTATTGATTTGGGATTTAAAGTTTC
TTTTTCGGGCAATATAACTTTTAAAAATGCACAACCTTTAAGAATTCTTGTTGGCAAATTAAATATAAATGATCTTTTAA
TAGAAACGGATAGCCCTTTTTTAGCTCCAGTGCCATTGAGAGGCAAAATTAATTCACCTTTGTTTTTAGGATATGTATGC
CTTGAGATTGCAAGGATTAAAAATTGCTCTGTTAATGATGTTGCTTTTGCAGTATATAATAGCTTTAAAGATCTTTTATT
GCTGCATTAA

Upstream 100 bases:

>100_bases
AGATTGGAAATGCTGTTGATATTTTATCAAGCTTTTTACAGCTTGGTATGAAAAATATTGTTGTTATTGACTACCTTGCG
GTTCTTAGGAAAAAAATGGA

Downstream 100 bases:

>100_bases
ATTTTATTTATAATTATTTATTTGTATGGTTTATTATTAGTTTTAAATTTAATCATTTTTATTGTTTATAAATGTTAAAT
TCATATTGAAAATCTTTTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MMDSLLETEKSIFFDKLIDTHVHFYELKKRSLDVNYIINECFKNGFSYFLDVGLHPSDFNDRKDLLSPYSNVFLTAGIHP
LNLSDHFKDDIKQLEKILISENVVAVGEMGLDYFKADNKKFQIKALEEQLYLADKYKRPVILHIRDAYDDVYNIVRSLNF
LNRGILHCYSGTYEHAKKFIDLGFKVSFSGNITFKNAQPLRILVGKLNINDLLIETDSPFLAPVPLRGKINSPLFLGYVC
LEIARIKNCSVNDVAFAVYNSFKDLLLLH

Sequences:

>Translated_269_residues
MMDSLLETEKSIFFDKLIDTHVHFYELKKRSLDVNYIINECFKNGFSYFLDVGLHPSDFNDRKDLLSPYSNVFLTAGIHP
LNLSDHFKDDIKQLEKILISENVVAVGEMGLDYFKADNKKFQIKALEEQLYLADKYKRPVILHIRDAYDDVYNIVRSLNF
LNRGILHCYSGTYEHAKKFIDLGFKVSFSGNITFKNAQPLRILVGKLNINDLLIETDSPFLAPVPLRGKINSPLFLGYVC
LEIARIKNCSVNDVAFAVYNSFKDLLLLH
>Mature_269_residues
MMDSLLETEKSIFFDKLIDTHVHFYELKKRSLDVNYIINECFKNGFSYFLDVGLHPSDFNDRKDLLSPYSNVFLTAGIHP
LNLSDHFKDDIKQLEKILISENVVAVGEMGLDYFKADNKKFQIKALEEQLYLADKYKRPVILHIRDAYDDVYNIVRSLNF
LNRGILHCYSGTYEHAKKFIDLGFKVSFSGNITFKNAQPLRILVGKLNINDLLIETDSPFLAPVPLRGKINSPLFLGYVC
LEIARIKNCSVNDVAFAVYNSFKDLLLLH

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=205, Percent_Identity=29.2682926829268, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI225903439, Length=180, Percent_Identity=30.5555555555556, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI225903424, Length=185, Percent_Identity=28.6486486486486, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI1787342, Length=253, Percent_Identity=35.5731225296443, Blast_Score=157, Evalue=8e-40,
Organism=Escherichia coli, GI87082439, Length=250, Percent_Identity=30, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI48994985, Length=235, Percent_Identity=28.0851063829787, Blast_Score=92, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17559024, Length=197, Percent_Identity=27.4111675126904, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI71980746, Length=254, Percent_Identity=24.8031496062992, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648690, Length=205, Percent_Identity=30.2439024390244, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24586117, Length=212, Percent_Identity=27.3584905660377, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI221330018, Length=212, Percent_Identity=27.3584905660377, Blast_Score=72, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 30986; Mature: 30986

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: PS01090 TATD_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDSLLETEKSIFFDKLIDTHVHFYELKKRSLDVNYIINECFKNGFSYFLDVGLHPSDFN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEECCCCCCCCC
DRKDLLSPYSNVFLTAGIHPLNLSDHFKDDIKQLEKILISENVVAVGEMGLDYFKADNKK
CHHHHHCHHHCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEHHCCCHHHCCCCCE
FQIKALEEQLYLADKYKRPVILHIRDAYDDVYNIVRSLNFLNRGILHCYSGTYEHAKKFI
EEEEEHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
DLGFKVSFSGNITFKNAQPLRILVGKLNINDLLIETDSPFLAPVPLRGKINSPLFLGYVC
HCCEEEEECCCEEECCCCCEEEEEEECCCCEEEEECCCCEEECCCCCCCCCCCHHHHHHH
LEIARIKNCSVNDVAFAVYNSFKDLLLLH
HHHHHHCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMDSLLETEKSIFFDKLIDTHVHFYELKKRSLDVNYIINECFKNGFSYFLDVGLHPSDFN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEECCCCCCCCC
DRKDLLSPYSNVFLTAGIHPLNLSDHFKDDIKQLEKILISENVVAVGEMGLDYFKADNKK
CHHHHHCHHHCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEHHCCCHHHCCCCCE
FQIKALEEQLYLADKYKRPVILHIRDAYDDVYNIVRSLNFLNRGILHCYSGTYEHAKKFI
EEEEEHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
DLGFKVSFSGNITFKNAQPLRILVGKLNINDLLIETDSPFLAPVPLRGKINSPLFLGYVC
HCCEEEEECCCEEECCCCCEEEEEEECCCCEEEEECCCCEEECCCCCCCCCCCHHHHHHH
LEIARIKNCSVNDVAFAVYNSFKDLLLLH
HHHHHHCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]