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The map label for this gene is sod [H]

Identifier: 15594498

GI number: 15594498

Start: 153075

End: 153719

Strand: Reverse

Name: sod [H]

Synonym: BB0153

Alternate gene names: 15594498

Gene position: 153719-153075 (Counterclockwise)

Preceding gene: 15594499

Following gene: 15594495

Centisome position: 16.88

GC content: 31.01

Gene sequence:

>645_bases
TTGTCATGGCAAAAGTTAAAACAGGAGGTTTTTATGTTTAAGCTGCCAGAACTTGGTTATGATTATGATGCTGTTGAGCC
TTATATTGATGCTAAAACTATGGAAATTCATCATAGCAAGCATCATAATGGTTTTGTAATGAATTTGAATTCTATTTTGG
AAAAAATGGGGAAAATTCATTTAACAGATGTGTCAAACATATTAAAAAATATTCATGATTTTCCAGAAGAATTTCAAACT
TTAATAAGAAATAATGCTGGTGGTTATTCTAACCATACTTTATATTTTAGAACTTTAAGGCCAGGAAACAAGGACAATCT
TTTTGAAAAGTTTAAAGATGATATTAATGCAGCTTTTGGAAGCCTAGACGTTCTTAAGGCCAATTTGAAAGATACTGCAA
TGAAAATTTTTGGAAGTGGTTGGGCATGGTTAGTATTGTGTCCTGAGAGTGGCCTTAAAGTGATTTCAATGCCTAATCAG
GATAGTCCTTTGATGAATTCTTATAAGCCGATTTTAGGTATTGATGTTTGGGAGCATGCCTATTACCTTAAATATCAAAA
TAGAAGAATTGAATATGTTGATGCATTTTTAAAGGCTTTAAATTGGGAAGAAGTTTCAAAAGTTTACAATGAAGTGATTA
ATTAG

Upstream 100 bases:

>100_bases
ATGAGAATAAAAGCGCTTCTAATGTTCAAGTGGTTAGAAGTTCTCCTAAAATAGGCAGAAATGAGCCTTGTTATTGTGGA
AGTGGGAAGAAATATAAAAA

Downstream 100 bases:

>100_bases
CCTTTACTTTATAAAGATTTTCAATTCTATATTTAGTATTTTACTTTAAAATTTTAAGCAATTTATTTTAAGTCATTATT
AAAGTTTTTTCTTTCTATAT

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MSWQKLKQEVFMFKLPELGYDYDAVEPYIDAKTMEIHHSKHHNGFVMNLNSILEKMGKIHLTDVSNILKNIHDFPEEFQT
LIRNNAGGYSNHTLYFRTLRPGNKDNLFEKFKDDINAAFGSLDVLKANLKDTAMKIFGSGWAWLVLCPESGLKVISMPNQ
DSPLMNSYKPILGIDVWEHAYYLKYQNRRIEYVDAFLKALNWEEVSKVYNEVIN

Sequences:

>Translated_214_residues
MSWQKLKQEVFMFKLPELGYDYDAVEPYIDAKTMEIHHSKHHNGFVMNLNSILEKMGKIHLTDVSNILKNIHDFPEEFQT
LIRNNAGGYSNHTLYFRTLRPGNKDNLFEKFKDDINAAFGSLDVLKANLKDTAMKIFGSGWAWLVLCPESGLKVISMPNQ
DSPLMNSYKPILGIDVWEHAYYLKYQNRRIEYVDAFLKALNWEEVSKVYNEVIN
>Mature_213_residues
SWQKLKQEVFMFKLPELGYDYDAVEPYIDAKTMEIHHSKHHNGFVMNLNSILEKMGKIHLTDVSNILKNIHDFPEEFQTL
IRNNAGGYSNHTLYFRTLRPGNKDNLFEKFKDDINAAFGSLDVLKANLKDTAMKIFGSGWAWLVLCPESGLKVISMPNQD
SPLMNSYKPILGIDVWEHAYYLKYQNRRIEYVDAFLKALNWEEVSKVYNEVIN

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=203, Percent_Identity=40.8866995073892, Blast_Score=144, Evalue=4e-35,
Organism=Homo sapiens, GI67782305, Length=203, Percent_Identity=40.8866995073892, Blast_Score=144, Evalue=4e-35,
Organism=Homo sapiens, GI67782309, Length=198, Percent_Identity=37.8787878787879, Blast_Score=120, Evalue=1e-27,
Organism=Escherichia coli, GI1790342, Length=203, Percent_Identity=44.8275862068966, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1787946, Length=195, Percent_Identity=37.9487179487179, Blast_Score=143, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI17506561, Length=198, Percent_Identity=39.8989898989899, Blast_Score=136, Evalue=7e-33,
Organism=Caenorhabditis elegans, GI17569479, Length=197, Percent_Identity=38.0710659898477, Blast_Score=132, Evalue=1e-31,
Organism=Saccharomyces cerevisiae, GI6321796, Length=208, Percent_Identity=33.1730769230769, Blast_Score=115, Evalue=6e-27,
Organism=Drosophila melanogaster, GI17136812, Length=201, Percent_Identity=40.2985074626866, Blast_Score=140, Evalue=7e-34,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 24929; Mature: 24798

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSWQKLKQEVFMFKLPELGYDYDAVEPYIDAKTMEIHHSKHHNGFVMNLNSILEKMGKIH
CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEHHHHHHHHCCEE
LTDVSNILKNIHDFPEEFQTLIRNNAGGYSNHTLYFRTLRPGNKDNLFEKFKDDINAAFG
EHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC
SLDVLKANLKDTAMKIFGSGWAWLVLCPESGLKVISMPNQDSPLMNSYKPILGIDVWEHA
CHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEECCCCCCCCHHCCCCHHEEHHHHHE
YYLKYQNRRIEYVDAFLKALNWEEVSKVYNEVIN
EEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure 
SWQKLKQEVFMFKLPELGYDYDAVEPYIDAKTMEIHHSKHHNGFVMNLNSILEKMGKIH
CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEHHHHHHHHCCEE
LTDVSNILKNIHDFPEEFQTLIRNNAGGYSNHTLYFRTLRPGNKDNLFEKFKDDINAAFG
EHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC
SLDVLKANLKDTAMKIFGSGWAWLVLCPESGLKVISMPNQDSPLMNSYKPILGIDVWEHA
CHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEECCCCCCCCHHCCCCHHEEHHHHHE
YYLKYQNRRIEYVDAFLKALNWEEVSKVYNEVIN
EEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353077; 9403685 [H]