Click here to switch to the map view.

The map label for this gene is ygaF

Identifier: 50812202

GI number: 50812202

Start: 943891

End: 944364

Strand: Direct

Name: ygaF

Synonym: BSU08720

Alternate gene names: 50812202

Gene position: 943891-944364 (Clockwise)

Preceding gene: 16077935

Following gene: 16077938

Centisome position: 22.39

GC content: 41.56

Gene sequence:

>474_bases
ATGACTATAGAAATCGGACAAAAAGCGCCTGATCTTGAGTTAAAAGGTGATCATGGGGAAACAGTAAAATTATCGGATTA
TAAAGGAAAGTACATCGTGCTTTATTTTTATCCAAAGGACATGACACCGGGATGTACAACTGAAGCATGCGATTTTCGGG
ACAGTCACGAAAGCTTCGCCGAACTGGATGCCGTCATTATCGGCGTCAGCCCGGACAGCCAGGAAAAACACGGAAAATTT
AAAGAGAAGCATAACCTTCCATTTCTGCTTCTTGTTGATGACGAGCATAAGCTGGCGGAAGCATTTGATGTGTGGAAGCT
GAAGAAAAACTTCGGAAAAGAGTATATGGGAATCGAGCGTTCCACTTTTTTAATTGATAAAGAAGGCCGGCTCATTAAAG
AATGGAGAAAAGTAAAAGTAAAGGACCATGTAGCCGAAGCGCTTCAAACCCTCAAAGATATGTCTGAAAAGTAA

Upstream 100 bases:

>100_bases
GAACAAGAACAATGGCTTCGGGCTTCAGATTCAGCTGAGATGGTTGTAATCTGGACAAGAATTGGATACGCTTAATAAAA
AAACATCCGGAGGTAACGTA

Downstream 100 bases:

>100_bases
ATCTCTATGAGCCTATGCTTACTTTTACCCTGATATCAATTGACAAATTATCGTAGAAAGAGTTACACTAATTATAAACA
TTACAATGTAAGAATTTTTT

Product: bacterioferritin comigratory protein; peroxiredoxin

Products: NA

Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MTIEIGQKAPDLELKGDHGETVKLSDYKGKYIVLYFYPKDMTPGCTTEACDFRDSHESFAELDAVIIGVSPDSQEKHGKF
KEKHNLPFLLLVDDEHKLAEAFDVWKLKKNFGKEYMGIERSTFLIDKEGRLIKEWRKVKVKDHVAEALQTLKDMSEK

Sequences:

>Translated_157_residues
MTIEIGQKAPDLELKGDHGETVKLSDYKGKYIVLYFYPKDMTPGCTTEACDFRDSHESFAELDAVIIGVSPDSQEKHGKF
KEKHNLPFLLLVDDEHKLAEAFDVWKLKKNFGKEYMGIERSTFLIDKEGRLIKEWRKVKVKDHVAEALQTLKDMSEK
>Mature_156_residues
TIEIGQKAPDLELKGDHGETVKLSDYKGKYIVLYFYPKDMTPGCTTEACDFRDSHESFAELDAVIIGVSPDSQEKHGKFK
EKHNLPFLLLVDDEHKLAEAFDVWKLKKNFGKEYMGIERSTFLIDKEGRLIKEWRKVKVKDHVAEALQTLKDMSEK

Specific function: Unknown

COG id: COG1225

COG function: function code O; Peroxiredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain

Homologues:

Organism=Homo sapiens, GI32189392, Length=167, Percent_Identity=37.7245508982036, Blast_Score=77, Evalue=9e-15,
Organism=Homo sapiens, GI33188454, Length=84, Percent_Identity=46.4285714285714, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI4505591, Length=152, Percent_Identity=32.8947368421053, Blast_Score=67, Evalue=7e-12,
Organism=Homo sapiens, GI32455266, Length=152, Percent_Identity=32.8947368421053, Blast_Score=67, Evalue=7e-12,
Organism=Homo sapiens, GI32455264, Length=152, Percent_Identity=32.8947368421053, Blast_Score=67, Evalue=7e-12,
Organism=Escherichia coli, GI1788825, Length=151, Percent_Identity=39.7350993377483, Blast_Score=121, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI193204376, Length=151, Percent_Identity=35.0993377483444, Blast_Score=72, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI32565831, Length=151, Percent_Identity=35.0993377483444, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322180, Length=93, Percent_Identity=37.6344086021505, Blast_Score=75, Evalue=5e-15,
Organism=Drosophila melanogaster, GI17738015, Length=163, Percent_Identity=31.9018404907975, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17157991, Length=128, Percent_Identity=35.15625, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24641739, Length=128, Percent_Identity=35.15625, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): BCP_BACSU (Q796Y8)

Other databases:

- EMBL:   AL009126
- RefSeq:   YP_054574.1
- HSSP:   P32119
- ProteinModelPortal:   Q796Y8
- SMR:   Q796Y8
- PeroxiBase:   4400
- EnsemblBacteria:   EBBACT00000001506
- GeneID:   2914207
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU08720
- GenoList:   BSU08720
- GeneTree:   EBGT00050000000760
- HOGENOM:   HBG493509
- OMA:   NFRDQYD
- PhylomeDB:   Q796Y8
- ProtClustDB:   CLSK2391461
- BioCyc:   BSUB:BSU08720-MONOMER
- InterPro:   IPR000866
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335
- Gene3D:   G3DSA:3.40.30.10

Pfam domain/function: PF00578 AhpC-TSA; SSF52833 Thiordxn-like_fd

EC number: =1.11.1.15

Molecular weight: Translated: 18109; Mature: 17978

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS51352 THIOREDOXIN_2

Important sites: ACT_SITE 45-45

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIEIGQKAPDLELKGDHGETVKLSDYKGKYIVLYFYPKDMTPGCTTEACDFRDSHESFA
CEEECCCCCCCCEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHH
ELDAVIIGVSPDSQEKHGKFKEKHNLPFLLLVDDEHKLAEAFDVWKLKKNFGKEYMGIER
HEEEEEEECCCCCCHHCCCCHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCCC
STFLIDKEGRLIKEWRKVKVKDHVAEALQTLKDMSEK
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TIEIGQKAPDLELKGDHGETVKLSDYKGKYIVLYFYPKDMTPGCTTEACDFRDSHESFA
EEECCCCCCCCEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHH
ELDAVIIGVSPDSQEKHGKFKEKHNLPFLLLVDDEHKLAEAFDVWKLKKNFGKEYMGIER
HEEEEEEECCCCCCHHCCCCHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCCC
STFLIDKEGRLIKEWRKVKVKDHVAEALQTLKDMSEK
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377