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The map label for this gene is ywcC

Identifier: 255767810

GI number: 255767810

Start: 3922292

End: 3922963

Strand: Reverse

Name: ywcC

Synonym: BSU38220

Alternate gene names: 255767810

Gene position: 3922963-3922292 (Counterclockwise)

Preceding gene: 16080876

Following gene: 16080872

Centisome position: 93.06

GC content: 41.22

Gene sequence:

>672_bases
ATGAAAAAAAACAAATTTCAAATTAAAAGAGAAGCAACATTTGAAAGTTTTATAGACGCTGGCGTGAATTTGTTGATTGA
CCGAGCGTATGATCCGGTTTCTGTAGAAGATATCAGCAGAGCCGCCGGGTACAGCAAAGGAGCATTTTATGTTCATTTTG
TCAGCAAGGACGATTTTCTGCTGTACCTTCTCGAAAAACGTCAGATGAAAAAAAAGATCATTATAGGGTATCTTGATCAA
ATGGAGCGGGAGTCAGTGAAATCGCTGACATTGGACGAGGCTGCAAAACACGCTGCAGAACTGCTTTATTCCTATTACAT
AAATAAGCCGTCGTGGGACATCACCTCGTTTGCCATGAACATGCCGACATATAAAGTCTTAAAGAAATGCAAGGCCTATG
TCCGGCTGTACGAATTGTGGGTGGAAGAAAATGTGTTATATATTAAGTGGCTGAAGGAGAGAAAGCTGATTGACGCCTGT
ATTGATCCTGAATATACGGCTAAAATAATATGTGCAGTCCTCGACGGAATCATCAAACAATCATATGTATTGGGCCAGCC
AGCCACCTTCCGCAGCTTTTTAGACGCACTCTCGGTATTTTTTACTTTAGACAGAGAGCACGAGAGGCCAAGAATTTTGA
AAAGTTTTTCAGAAAGCGAGGAACATCAGTGA

Upstream 100 bases:

>100_bases
CCCCTGGGAAACCGAATAGCATAACCGTTTAAAGAAATAAATACCGCTAAAGATTGATCCGGTGTAAGATAAGGGTAATC
ATTACCGCCAGGAGAAAAAT

Downstream 100 bases:

>100_bases
AGTATAGAGAAATAATTATGTATATCATTATGGGGGTTTTCACAACCATTGTGAATATCGCCAGCTTTTATATATTGGTA
GAGATCATGAATGTGGATTA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MKKNKFQIKREATFESFIDAGVNLLIDRAYDPVSVEDISRAAGYSKGAFYVHFVSKDDFLLYLLEKRQMKKKIIIGYLDQ
MERESVKSLTLDEAAKHAAELLYSYYINKPSWDITSFAMNMPTYKVLKKCKAYVRLYELWVEENVLYIKWLKERKLIDAC
IDPEYTAKIICAVLDGIIKQSYVLGQPATFRSFLDALSVFFTLDREHERPRILKSFSESEEHQ

Sequences:

>Translated_223_residues
MKKNKFQIKREATFESFIDAGVNLLIDRAYDPVSVEDISRAAGYSKGAFYVHFVSKDDFLLYLLEKRQMKKKIIIGYLDQ
MERESVKSLTLDEAAKHAAELLYSYYINKPSWDITSFAMNMPTYKVLKKCKAYVRLYELWVEENVLYIKWLKERKLIDAC
IDPEYTAKIICAVLDGIIKQSYVLGQPATFRSFLDALSVFFTLDREHERPRILKSFSESEEHQ
>Mature_223_residues
MKKNKFQIKREATFESFIDAGVNLLIDRAYDPVSVEDISRAAGYSKGAFYVHFVSKDDFLLYLLEKRQMKKKIIIGYLDQ
MERESVKSLTLDEAAKHAAELLYSYYINKPSWDITSFAMNMPTYKVLKKCKAYVRLYELWVEENVLYIKWLKERKLIDAC
IDPEYTAKIICAVLDGIIKQSYVLGQPATFRSFLDALSVFFTLDREHERPRILKSFSESEEHQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YWCC_BACSU (P39601)

Other databases:

- EMBL:   X73124
- EMBL:   AL009126
- PIR:   S39688
- RefSeq:   NP_391701.2
- ProteinModelPortal:   P39601
- SMR:   P39601
- EnsemblBacteria:   EBBACT00000003266
- GeneID:   937314
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU38220
- NMPDR:   fig|224308.1.peg.3827
- GenoList:   BSU38220
- GeneTree:   EBGT00050000000404
- HOGENOM:   HBG338453
- ProtClustDB:   CLSK888099
- BioCyc:   BSUB:BSU38220-MONOMER
- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647
- Gene3D:   G3DSA:1.10.357.10
- PRINTS:   PR00455

Pfam domain/function: PF00440 TetR_N; SSF46689 Homeodomain_like

EC number: NA

Molecular weight: Translated: 26132; Mature: 26132

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: PS01081 HTH_TETR_1; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNKFQIKREATFESFIDAGVNLLIDRAYDPVSVEDISRAAGYSKGAFYVHFVSKDDFL
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCH
LYLLEKRQMKKKIIIGYLDQMERESVKSLTLDEAAKHAAELLYSYYINKPSWDITSFAMN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHC
MPTYKVLKKCKAYVRLYELWVEENVLYIKWLKERKLIDACIDPEYTAKIICAVLDGIIKQ
CCHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SYVLGQPATFRSFLDALSVFFTLDREHERPRILKSFSESEEHQ
HHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKNKFQIKREATFESFIDAGVNLLIDRAYDPVSVEDISRAAGYSKGAFYVHFVSKDDFL
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCH
LYLLEKRQMKKKIIIGYLDQMERESVKSLTLDEAAKHAAELLYSYYINKPSWDITSFAMN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHC
MPTYKVLKKCKAYVRLYELWVEENVLYIKWLKERKLIDACIDPEYTAKIICAVLDGIIKQ
CCHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SYVLGQPATFRSFLDALSVFFTLDREHERPRILKSFSESEEHQ
HHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377