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The map label for this gene is ywcD

Identifier: 16080872

GI number: 16080872

Start: 3921891

End: 3922274

Strand: Reverse

Name: ywcD

Synonym: BSU38210

Alternate gene names: 16080872

Gene position: 3922274-3921891 (Counterclockwise)

Preceding gene: 255767810

Following gene: 16080871

Centisome position: 93.04

GC content: 40.89

Gene sequence:

>384_bases
ATGTATATCATTATGGGGGTTTTCACAACCATTGTGAATATCGCCAGCTTTTATATATTGGTAGAGATCATGAATGTGGA
TTACAAAGCCGCCACTGTTGCCGCTTGGATTTTGTCCGTGCTGTTTGCTTACATAACAAATAAATTATATGTGTTTCAGC
AAAAAACACATGATCTGCAGAGCCTGCTGAAAGAGCTCACTGCTTTTTTCAGCGTTCGGGTCCTGTCTCTCGGCATAGAT
TTAGGCATGATGATCATTCTTGTCGGCCAGTTCAATACAAATGAAACCTTGGCCAAAATACTCGACAACGCGGTCATTGT
TGTCGTCAACTATGTTGCGAGCAAATGGCTCGTCTTTAAAAAAACAAAAGAAGAAGGGGTATGA

Upstream 100 bases:

>100_bases
TCTCGGTATTTTTTACTTTAGACAGAGAGCACGAGAGGCCAAGAATTTTGAAAAGTTTTTCAGAAAGCGAGGAACATCAG
TGAAGTATAGAGAAATAATT

Downstream 100 bases:

>100_bases
GAGGACTGCAGCATATGATCTGCCGTTTTCTATGAAGAAATAAGGGGAATAAAAAATAAAAACCAGAAAGGTGATTGCAC
ATGCGGGAAGAGCTAAAGGG

Product: integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MYIIMGVFTTIVNIASFYILVEIMNVDYKAATVAAWILSVLFAYITNKLYVFQQKTHDLQSLLKELTAFFSVRVLSLGID
LGMMIILVGQFNTNETLAKILDNAVIVVVNYVASKWLVFKKTKEEGV

Sequences:

>Translated_127_residues
MYIIMGVFTTIVNIASFYILVEIMNVDYKAATVAAWILSVLFAYITNKLYVFQQKTHDLQSLLKELTAFFSVRVLSLGID
LGMMIILVGQFNTNETLAKILDNAVIVVVNYVASKWLVFKKTKEEGV
>Mature_127_residues
MYIIMGVFTTIVNIASFYILVEIMNVDYKAATVAAWILSVLFAYITNKLYVFQQKTHDLQSLLKELTAFFSVRVLSLGID
LGMMIILVGQFNTNETLAKILDNAVIVVVNYVASKWLVFKKTKEEGV

Specific function: Unknown

COG id: COG2246

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gtrA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YWCD_BACSU (P39602)

Other databases:

- EMBL:   X73124
- EMBL:   AL009126
- PIR:   S39689
- RefSeq:   NP_391700.1
- ProteinModelPortal:   P39602
- EnsemblBacteria:   EBBACT00000000391
- GeneID:   937313
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU38210
- NMPDR:   fig|224308.1.peg.3826
- GenoList:   BSU38210
- GeneTree:   EBGT00050000001857
- HOGENOM:   HBG698184
- OMA:   IANTIAW
- ProtClustDB:   CLSK888098
- BioCyc:   BSUB:BSU38210-MONOMER
- GO:   GO:0006810
- InterPro:   IPR007267

Pfam domain/function: PF04138 GtrA

EC number: NA

Molecular weight: Translated: 14349; Mature: 14349

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x12443b34)-; HASH(0x11883a0c)-; HASH(0x12d005c4)-; HASH(0x114cc3e4)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYIIMGVFTTIVNIASFYILVEIMNVDYKAATVAAWILSVLFAYITNKLYVFQQKTHDLQ
CEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHH
SLLKELTAFFSVRVLSLGIDLGMMIILVGQFNTNETLAKILDNAVIVVVNYVASKWLVFK
HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHEE
KTKEEGV
CCCCCCH
>Mature Secondary Structure
MYIIMGVFTTIVNIASFYILVEIMNVDYKAATVAAWILSVLFAYITNKLYVFQQKTHDLQ
CEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHH
SLLKELTAFFSVRVLSLGIDLGMMIILVGQFNTNETLAKILDNAVIVVVNYVASKWLVFK
HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHEE
KTKEEGV
CCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377