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The map label for this gene is ywdJ

Identifier: 255767799

GI number: 255767799

Start: 3894463

End: 3895785

Strand: Reverse

Name: ywdJ

Synonym: BSU37940

Alternate gene names: 255767799

Gene position: 3895785-3894463 (Counterclockwise)

Preceding gene: 255767800

Following gene: 255767798

Centisome position: 92.41

GC content: 47.47

Gene sequence:

>1323_bases
GTGAAATTGGTTCTTGGCGCGCTGCAATGGACAGCGTTTATTATTGCTGCGGCGATTGTTGTTCCGGTGGCGGTTGCCCA
GTCGTTTCATCTGGATCACTCAGATTCTGCAAGATTGATTCAAAGCACTTTTTTTGTACTGGGAATTGCCGCCGTCATTC
AGTGTTTGAAAGGCCACAGACTGCCGATCAATGAAAGCCCAGCCGGCTTGTGGTGGGGAGTGTATACGATTTACGCAGGG
CTGACGGGAACTGTGTTTGCGACATATGGAGACACACTGCGGGGTTTGCAGGGAGCTCTTCTTGTAAGCGCTGTATGTTT
CTTTTTGTTAAGTGTTTTCAAGGTCATTGACAGACTTGCAAAATTGTTTACTCCGGTTGTAACGGGCGTCTATTTATTGC
TTCTTGTCATGCAGCTGAGTCAGCCCATTATAAAAGGAATTCTCGGAATCGGTTATCGACAGGACGGGGTGGACGGTCTT
GTATTTGGCCTGGCGCTTGTTGTGATCGCTGCCGCTTTTATAATGACAAATTCGAACATCATGTTTTTTAAGCAATATTC
TATTTTATTAGCCTTGTTCGGCGGGTGGGTGCTGTTTGCGGCTGCCGGAGCCGCAAAGCCGATTGAAATGCCGGACCGGC
TGTTTCAGCTGCCTTCCCTGTTTCCTTTTGGGACCCCGTTATTTAACAGCGGCCTGATCATCACTTCTATTTTTATTACC
ATCTTGCTGATCGTGAATATGCTGGCGAGCATGAAGGTCGTGGACATCGCCATGAAAAAATTCAGCAAACAGCCTGATGG
AAAGCATCATGAACGCCATGCCGGTTTTGCAGCTTCATTCAGCCATCTGCTTAGCGGTTTGACGGGAGCTATTGCGCCTG
TTCCGATTTCGGGAGCCGCAGGTTTTATTGAAACGACCAAGATGCCTTCTAAAAAACCGTTTATGCTCGGCAGTATTCTG
GTTATCGTGATCAGCGTGATCCCGTTTTTTATGAATACGTTTGCGAGCCTGCCGTCACCCGTTGGATTTGCGGTGAATTT
TGTTGTGTTCTCCGCAATGGGCGGTCTGGCCTTTGCCGAATTTGATTCATATGAGAAAGAAGAATCAAAAAGGGTGAGGT
CTATCATCGGTATCTCACTGCTGACAGGGGTCGGTATCATGTTTGTTCCTGAAACTGCGTTAAAGGGATTGCATCCGGTA
TTTATTTCTCTATTAAGCAACGGGCTCGTATTAGGGACGCTTGCTGCAATAGCAGCTGACCAGTTCCAGCTTTGGCGCAG
GAGAAAATCCGACAATCTCGTGTCAACGGAGAACAAACATTGA

Upstream 100 bases:

>100_bases
GCGGGATTAAACAAATATCGAAAGCAAGAAAAAGAGAAGCAGGAAGAGGATGGAAACGGAGAGTCTTTATTTGATTTTTA
AAGAGAGAGGTTGAGCTTAC

Downstream 100 bases:

>100_bases
ATTTTGGTGCAGGTGCGATAAGATAAATGATATGAGTTTAACGAAAAGGCGGGAGAGATAGATGAAAGTTTTTATCATAT
TAGGGGCCATTAACGCCCTG

Product: purine/pyrimidine permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MKLVLGALQWTAFIIAAAIVVPVAVAQSFHLDHSDSARLIQSTFFVLGIAAVIQCLKGHRLPINESPAGLWWGVYTIYAG
LTGTVFATYGDTLRGLQGALLVSAVCFFLLSVFKVIDRLAKLFTPVVTGVYLLLLVMQLSQPIIKGILGIGYRQDGVDGL
VFGLALVVIAAAFIMTNSNIMFFKQYSILLALFGGWVLFAAAGAAKPIEMPDRLFQLPSLFPFGTPLFNSGLIITSIFIT
ILLIVNMLASMKVVDIAMKKFSKQPDGKHHERHAGFAASFSHLLSGLTGAIAPVPISGAAGFIETTKMPSKKPFMLGSIL
VIVISVIPFFMNTFASLPSPVGFAVNFVVFSAMGGLAFAEFDSYEKEESKRVRSIIGISLLTGVGIMFVPETALKGLHPV
FISLLSNGLVLGTLAAIAADQFQLWRRRKSDNLVSTENKH

Sequences:

>Translated_440_residues
MKLVLGALQWTAFIIAAAIVVPVAVAQSFHLDHSDSARLIQSTFFVLGIAAVIQCLKGHRLPINESPAGLWWGVYTIYAG
LTGTVFATYGDTLRGLQGALLVSAVCFFLLSVFKVIDRLAKLFTPVVTGVYLLLLVMQLSQPIIKGILGIGYRQDGVDGL
VFGLALVVIAAAFIMTNSNIMFFKQYSILLALFGGWVLFAAAGAAKPIEMPDRLFQLPSLFPFGTPLFNSGLIITSIFIT
ILLIVNMLASMKVVDIAMKKFSKQPDGKHHERHAGFAASFSHLLSGLTGAIAPVPISGAAGFIETTKMPSKKPFMLGSIL
VIVISVIPFFMNTFASLPSPVGFAVNFVVFSAMGGLAFAEFDSYEKEESKRVRSIIGISLLTGVGIMFVPETALKGLHPV
FISLLSNGLVLGTLAAIAADQFQLWRRRKSDNLVSTENKH
>Mature_440_residues
MKLVLGALQWTAFIIAAAIVVPVAVAQSFHLDHSDSARLIQSTFFVLGIAAVIQCLKGHRLPINESPAGLWWGVYTIYAG
LTGTVFATYGDTLRGLQGALLVSAVCFFLLSVFKVIDRLAKLFTPVVTGVYLLLLVMQLSQPIIKGILGIGYRQDGVDGL
VFGLALVVIAAAFIMTNSNIMFFKQYSILLALFGGWVLFAAAGAAKPIEMPDRLFQLPSLFPFGTPLFNSGLIITSIFIT
ILLIVNMLASMKVVDIAMKKFSKQPDGKHHERHAGFAASFSHLLSGLTGAIAPVPISGAAGFIETTKMPSKKPFMLGSIL
VIVISVIPFFMNTFASLPSPVGFAVNFVVFSAMGGLAFAEFDSYEKEESKRVRSIIGISLLTGVGIMFVPETALKGLHPV
FISLLSNGLVLGTLAAIAADQFQLWRRRKSDNLVSTENKH

Specific function: Unknown

COG id: COG2233

COG function: function code F; Xanthine/uracil permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. Nucleobase:cation symporter-2 (NCS2) (TC 2.A.40) subfamily

Homologues:

Organism=Escherichia coli, GI87081750, Length=432, Percent_Identity=26.3888888888889, Blast_Score=131, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YWDJ_BACSU (P39618)

Other databases:

- EMBL:   X73124
- EMBL:   AL009126
- PIR:   S39715
- RefSeq:   NP_391673.2
- EnsemblBacteria:   EBBACT00000000514
- GeneID:   937261
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU37940
- NMPDR:   fig|224308.1.peg.3799
- GenoList:   BSU37940
- GeneTree:   EBGT00050000001001
- HOGENOM:   HBG339137
- PhylomeDB:   P39618
- ProtClustDB:   CLSK888085
- BioCyc:   BSUB:BSU37940-MONOMER
- InterPro:   IPR006042
- InterPro:   IPR006043

Pfam domain/function: PF00860 Xan_ur_permease

EC number: NA

Molecular weight: Translated: 47375; Mature: 47375

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: PS01116 XANTH_URACIL_PERMASE; PS00146 BETA_LACTAMASE_A

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x12b3c740)-; HASH(0x109bc368)-; HASH(0x11815d58)-; HASH(0x12e0f638)-; HASH(0x12eb36a4)-; HASH(0x132d5664)-; HASH(0x128cd018)-; HASH(0x129554f4)-; HASH(0x130dc868)-; HASH(0x12a30570)-; HASH(0xff07950)-; HASH(0x12acb2bc)-; HASH(0x123ff24c)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCCCCCCCCCCH
>Mature Secondary Structure
MKLVLGALQWTAFIIAAAIVVPVAVAQSFHLDHSDSARLIQSTFFVLGIAAVIQCLKGHR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
LPINESPAGLWWGVYTIYAGLTGTVFATYGDTLRGLQGALLVSAVCFFLLSVFKVIDRLA
CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLFTPVVTGVYLLLLVMQLSQPIIKGILGIGYRQDGVDGLVFGLALVVIAAAFIMTNSNI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCE
MFFKQYSILLALFGGWVLFAAAGAAKPIEMPDRLFQLPSLFPFGTPLFNSGLIITSIFIT
EEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCHHCCCHHHHHHHHH
ILLIVNMLASMKVVDIAMKKFSKQPDGKHHERHAGFAASFSHLLSGLTGAIAPVPISGAA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
GFIETTKMPSKKPFMLGSILVIVISVIPFFMNTFASLPSPVGFAVNFVVFSAMGGLAFAE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHH
FDSYEKEESKRVRSIIGISLLTGVGIMFVPETALKGLHPVFISLLSNGLVLGTLAAIAAD
HHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHCCHHHHHHHHHHCCHHHHHHHHHHHH
QFQLWRRRKSDNLVSTENKH
HHHHHHHHCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377