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The map label for this gene is yugU

Identifier: 255767707

GI number: 255767707

Start: 3213854

End: 3214252

Strand: Reverse

Name: yugU

Synonym: BSU31280

Alternate gene names: 255767707

Gene position: 3214252-3213854 (Counterclockwise)

Preceding gene: 255767708

Following gene: 255767706

Centisome position: 76.25

GC content: 47.37

Gene sequence:

>399_bases
ATGCTGAAAACACTGCAAATCAAAACAACCAAACGAGATGAAATGATAGATATCACCCGGGAGGTGGAAGCGTTTCTTCA
AGAAACAGGTATAACGAGCGGCGCAGCGCTGATTTACTGTCCGCATACGACTGCGGGCATTACAATTAATGAAAATGCCG
ATCCGGACGTCAAAAAAGATATGCTCAGAAGGTTTGATGAGGTATATCCGTGGGAACATGAGCTGGACCGCCATATGGAG
GGCAATACAGCTGCACACATGAAGTCGAGTACGGTCGGAGCTTCACAGCATGTCATTGTGGAAAACGGCCGGCTTATTCT
TGGAACGTGGCAGGGCATTTATTTCTGCGAATTTGACGGGCCTCGCACCCGGACATGCTATATCAAAATGATGGGATAA

Upstream 100 bases:

>100_bases
GTTTTTTTGTTTTATCGGGTTTATGAGAGCGGTTTAACAGGAAAAAAAAGAACACAGAACGAATTAAGCGATGAGAGCGG
ACAAACGAAAGGAGAAACAA

Downstream 100 bases:

>100_bases
TAGGCTGTTTTTTATGACAAAAGCATGATCGCTGAACAAGCGCCGATAGCCGGAGGGCTTGTCACACCCGCCCACGCTGC
GGCTTTATCGAATGAAGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MLKTLQIKTTKRDEMIDITREVEAFLQETGITSGAALIYCPHTTAGITINENADPDVKKDMLRRFDEVYPWEHELDRHME
GNTAAHMKSSTVGASQHVIVENGRLILGTWQGIYFCEFDGPRTRTCYIKMMG

Sequences:

>Translated_132_residues
MLKTLQIKTTKRDEMIDITREVEAFLQETGITSGAALIYCPHTTAGITINENADPDVKKDMLRRFDEVYPWEHELDRHME
GNTAAHMKSSTVGASQHVIVENGRLILGTWQGIYFCEFDGPRTRTCYIKMMG
>Mature_132_residues
MLKTLQIKTTKRDEMIDITREVEAFLQETGITSGAALIYCPHTTAGITINENADPDVKKDMLRRFDEVYPWEHELDRHME
GNTAAHMKSSTVGASQHVIVENGRLILGTWQGIYFCEFDGPRTRTCYIKMMG

Specific function: Unknown

COG id: COG0432

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0047 family

Homologues:

Organism=Escherichia coli, GI1790491, Length=89, Percent_Identity=38.2022471910112, Blast_Score=62, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YUGU_BACSU (O05243)

Other databases:

- EMBL:   Z93935
- EMBL:   AL009126
- PIR:   A70012
- RefSeq:   NP_391006.2
- ProteinModelPortal:   O05243
- SMR:   O05243
- EnsemblBacteria:   EBBACT00000002616
- GeneID:   937156
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU31280
- NMPDR:   fig|224308.1.peg.3131
- GenoList:   BSU31280
- GeneTree:   EBGT00050000002173
- HOGENOM:   HBG409904
- ProtClustDB:   CLSK887786
- BioCyc:   BSUB:BSU31280-MONOMER
- InterPro:   IPR001602
- Gene3D:   G3DSA:2.60.120.460
- PIRSF:   PIRSF004681
- TIGRFAMs:   TIGR00149

Pfam domain/function: PF01894 UPF0047; SSF111038 UPF0047

EC number: NA

Molecular weight: Translated: 15038; Mature: 15038

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS01314 UPF0047

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKTLQIKTTKRDEMIDITREVEAFLQETGITSGAALIYCPHTTAGITINENADPDVKKD
CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEECCCCCCCHHHH
MLRRFDEVYPWEHELDRHMEGNTAAHMKSSTVGASQHVIVENGRLILGTWQGIYFCEFDG
HHHHHHHCCCCHHHHHHCCCCCCCEEEECCCCCCCCEEEEECCEEEEEECCCEEEEECCC
PRTRTCYIKMMG
CCCEEEEEEEEC
>Mature Secondary Structure
MLKTLQIKTTKRDEMIDITREVEAFLQETGITSGAALIYCPHTTAGITINENADPDVKKD
CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEECCCCCCCHHHH
MLRRFDEVYPWEHELDRHMEGNTAAHMKSSTVGASQHVIVENGRLILGTWQGIYFCEFDG
HHHHHHHCCCCHHHHHHCCCCCCCEEEECCCCCCCCEEEEECCEEEEEECCCEEEEECCC
PRTRTCYIKMMG
CCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377