Click here to switch to the map view.

The map label for this gene is sodA

Identifier: 255767567

GI number: 255767567

Start: 2585434

End: 2586042

Strand: Reverse

Name: sodA

Synonym: BSU25020

Alternate gene names: 255767567

Gene position: 2586042-2585434 (Counterclockwise)

Preceding gene: 16079558

Following gene: 255767566

Centisome position: 61.34

GC content: 45.65

Gene sequence:

>609_bases
ATGGCTTACGAACTTCCAGAATTACCTTATGCGTACGATGCTTTAGAACCGCATATCGACAAGGAAACTATGACTATTCA
CCATACGAAACACCACAACACATACGTGACAAATTTAAACAAAGCGGTTGAAGGAAACACTGCTCTTGCCAACAAATCAG
TTGAAGAGCTTGTTGCAGATCTTGATTCTGTTCCTGAAAACATCCGCACTGCAGTCCGCAACAACGGCGGCGGACACGCG
AACCACAAATTATTCTGGACACTTTTATCTCCAAACGGCGGAGGCGAACCGACTGGCGCGCTTGCTGAAGAGATTAACAG
TGTATTTGGAAGCTTTGACAAATTCAAAGAGCAATTCGCAGCAGCAGCAGCTGGACGCTTCGGTTCTGGCTGGGCATGGC
TTGTTGTGAACAACGGTAAACTTGAAATCACAAGCACGCCAAACCAAGATTCTCCGCTTTCAGAAGGCAAAACGCCTATC
TTAGGTCTTGACGTTTGGGAGCATGCTTACTACCTTAACTATCAAAACCGCCGTCCTGATTACATTTCAGCTTTCTGGAA
TGTTGTAAACTGGGACGAAGTGGCTCGTCTATACAGCGAAGCAAAATAA

Upstream 100 bases:

>100_bases
GCTTTTTCATTGATTACAAAGCATTCTTTTGTTACATTGAATGAAGAAAGGCTCGCTGTGAAGCGGCATTTCAGTACATA
TATACTAAGGAGGAATTATC

Downstream 100 bases:

>100_bases
TGGCACAAACAAGGTCCTCATTATGGGACCTTGTTTTTTTATGTCTTCTTTTTACATATCTCGGTTTGAGTGAGACAGAC
TAAGGGATAGTAAAGGGGAG

Product: superoxide dismutase

Products: NA

Alternate protein names: General stress protein 24; GSP24

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MAYELPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVADLDSVPENIRTAVRNNGGGHA
NHKLFWTLLSPNGGGEPTGALAEEINSVFGSFDKFKEQFAAAAAGRFGSGWAWLVVNNGKLEITSTPNQDSPLSEGKTPI
LGLDVWEHAYYLNYQNRRPDYISAFWNVVNWDEVARLYSEAK

Sequences:

>Translated_202_residues
MAYELPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVADLDSVPENIRTAVRNNGGGHA
NHKLFWTLLSPNGGGEPTGALAEEINSVFGSFDKFKEQFAAAAAGRFGSGWAWLVVNNGKLEITSTPNQDSPLSEGKTPI
LGLDVWEHAYYLNYQNRRPDYISAFWNVVNWDEVARLYSEAK
>Mature_201_residues
AYELPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVADLDSVPENIRTAVRNNGGGHAN
HKLFWTLLSPNGGGEPTGALAEEINSVFGSFDKFKEQFAAAAAGRFGSGWAWLVVNNGKLEITSTPNQDSPLSEGKTPIL
GLDVWEHAYYLNYQNRRPDYISAFWNVVNWDEVARLYSEAK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family

Homologues:

Organism=Homo sapiens, GI67782307, Length=205, Percent_Identity=53.1707317073171, Blast_Score=213, Evalue=9e-56,
Organism=Homo sapiens, GI67782305, Length=205, Percent_Identity=53.1707317073171, Blast_Score=213, Evalue=9e-56,
Organism=Homo sapiens, GI67782309, Length=204, Percent_Identity=41.6666666666667, Blast_Score=152, Evalue=2e-37,
Organism=Escherichia coli, GI1790342, Length=208, Percent_Identity=58.6538461538462, Blast_Score=247, Evalue=4e-67,
Organism=Escherichia coli, GI1787946, Length=197, Percent_Identity=52.2842639593909, Blast_Score=205, Evalue=1e-54,
Organism=Caenorhabditis elegans, GI17506561, Length=205, Percent_Identity=44.390243902439, Blast_Score=173, Evalue=6e-44,
Organism=Caenorhabditis elegans, GI17569479, Length=203, Percent_Identity=41.871921182266, Blast_Score=166, Evalue=6e-42,
Organism=Saccharomyces cerevisiae, GI6321796, Length=204, Percent_Identity=42.6470588235294, Blast_Score=159, Evalue=3e-40,
Organism=Drosophila melanogaster, GI17136812, Length=205, Percent_Identity=45.3658536585366, Blast_Score=177, Evalue=5e-45,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): SODM_BACSU (P54375)

Other databases:

- EMBL:   D84432
- EMBL:   AL009126
- PIR:   B69709
- RefSeq:   NP_390381.3
- PDB:   2RCV
- PDBsum:   2RCV
- ProteinModelPortal:   P54375
- SMR:   P54375
- PhosSite:   P54375
- EnsemblBacteria:   EBBACT00000000824
- GeneID:   938052
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU25020
- GenoList:   BSU25020
- GeneTree:   EBGT00050000001142
- HOGENOM:   HBG507761
- PhylomeDB:   P54375
- ProtClustDB:   CLSK2793875
- BioCyc:   BSUB:BSU25020-MONOMER
- BRENDA:   1.15.1.1
- GO:   GO:0005737
- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831
- PANTHER:   PTHR11404
- PIRSF:   PIRSF000349
- PRINTS:   PR01703

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N; SSF46609 SODismutase; SSF54719 SODismutase

EC number: =1.15.1.1

Molecular weight: Translated: 22490; Mature: 22359

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYELPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVAD
CCCCCCCCCCHHHCCCCCCCCCEEEEEECCCCCEEEECCHHHHCCCHHHHHHHHHHHHHH
LDSVPENIRTAVRNNGGGHANHKLFWTLLSPNGGGEPTGALAEEINSVFGSFDKFKEQFA
HHHCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHH
AAAAGRFGSGWAWLVVNNGKLEITSTPNQDSPLSEGKTPILGLDVWEHAYYLNYQNRRPD
HHHCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCEEEEEHHHHEEEEECCCCCCH
YISAFWNVVNWDEVARLYSEAK
HHHHHHHHCCHHHHHHHHHCCC
>Mature Secondary Structure 
AYELPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVAD
CCCCCCCCCHHHCCCCCCCCCEEEEEECCCCCEEEECCHHHHCCCHHHHHHHHHHHHHH
LDSVPENIRTAVRNNGGGHANHKLFWTLLSPNGGGEPTGALAEEINSVFGSFDKFKEQFA
HHHCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCHHHHHHHHH
AAAAGRFGSGWAWLVVNNGKLEITSTPNQDSPLSEGKTPILGLDVWEHAYYLNYQNRRPD
HHHCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCEEEEEHHHHEEEEECCCCCCH
YISAFWNVVNWDEVARLYSEAK
HHHHHHHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 10568751; 9298659; 10658653