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The map label for this gene is yoeC

Identifier: 255767432

GI number: 255767432

Start: 2003401

End: 2003946

Strand: Reverse

Name: yoeC

Synonym: BSU18390

Alternate gene names: 255767432

Gene position: 2003946-2003401 (Counterclockwise)

Preceding gene: 16078901

Following gene: 255767430

Centisome position: 47.54

GC content: 41.03

Gene sequence:

>546_bases
ATGCATATTGTACAGCCGATTCGCAGTCTAGAGAAAATCCAAGAAGTCAAACAGTATTTGCTTAACAAAAACAAGCGGGA
TTATTTTCTGTTTATTTTCGGCATCAACAGCGCGCTCCGTATTTCTGATATTCTGCCGCTGCAAGTGAAGGACGTTCAAA
ATAAAGATCATTTATGGGCGACTGAAAGCAAAACGAAAAAGAAAAGAAAGATTCTTATTTTAGAATCGCTGAAACAGGAA
ATATACGAGTATACGAAAGACATGAAGGAAAACGAATATCTTTTTAAATCAGTGCGGACCAGGAAGCCGATTTCCCGCAT
TCAGGCCTACAGAATTTTAAGAGAGGCCGCTGCAGCGTGCGGACTTGAGGAGATAGGGACGCATACACTCCGGAAAACGT
TTGGCTATCATTTTTATCAGCGAACGAAAGACATCGCCGAGCTGCAGAGAATACTGAATCATTCATCACCATCAATTACA
ATGCGGTATATCGGTATTGATGAAGATACGACAAGAGCCGCATATAAGGTTTTTGGAGGGCTTTAA

Upstream 100 bases:

>100_bases
GTTACATAAACGCCGCCGCACTTTGACATTCAACGTTTTTCAGCTATAATAGTAACATAGACCTCAAAATGTTACATAAC
GGTTTTTAAGGAGTTTTTTG

Downstream 100 bases:

>100_bases
TACAAATCGCTTGAAAATATTGATCATCAGAGCTACTATATAAATACCAAAAGCTCTAGTAGCACAGCGGATAGTGCAGC
AGTTTCCTAAACTGCAGGTC

Product: bacteriophage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MHIVQPIRSLEKIQEVKQYLLNKNKRDYFLFIFGINSALRISDILPLQVKDVQNKDHLWATESKTKKKRKILILESLKQE
IYEYTKDMKENEYLFKSVRTRKPISRIQAYRILREAAAACGLEEIGTHTLRKTFGYHFYQRTKDIAELQRILNHSSPSIT
MRYIGIDEDTTRAAYKVFGGL

Sequences:

>Translated_181_residues
MHIVQPIRSLEKIQEVKQYLLNKNKRDYFLFIFGINSALRISDILPLQVKDVQNKDHLWATESKTKKKRKILILESLKQE
IYEYTKDMKENEYLFKSVRTRKPISRIQAYRILREAAAACGLEEIGTHTLRKTFGYHFYQRTKDIAELQRILNHSSPSIT
MRYIGIDEDTTRAAYKVFGGL
>Mature_181_residues
MHIVQPIRSLEKIQEVKQYLLNKNKRDYFLFIFGINSALRISDILPLQVKDVQNKDHLWATESKTKKKRKILILESLKQE
IYEYTKDMKENEYLFKSVRTRKPISRIQAYRILREAAAACGLEEIGTHTLRKTFGYHFYQRTKDIAELQRILNHSSPSIT
MRYIGIDEDTTRAAYKVFGGL

Specific function: Fime Is One Of The 2 Regulatory Proteins Which Control The Phase Variation Of Type 1 Fimbriae In E. coli. These Proteins Mediate The Periodic Inversion Of A 300bp DNA Segment That Harbors The Promoter For The Fimbrial Structural Gene, Fima. Fime Switches

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOEC_BACSU (O35009)

Other databases:

- EMBL:   AL009126
- RefSeq:   NP_389721.2
- ProteinModelPortal:   O35009
- SMR:   O35009
- EnsemblBacteria:   EBBACT00000002916
- GeneID:   939595
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU18390
- GenoList:   BSU18390
- GeneTree:   EBGT00050000000691
- ProtClustDB:   CLSK2539626
- BioCyc:   BSUB:BSU18390-MONOMER
- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- Gene3D:   G3DSA:1.10.443.10

Pfam domain/function: PF00589 Phage_integrase; SSF56349 DNA_brk_join_enz

EC number: NA

Molecular weight: Translated: 21371; Mature: 21371

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: ACT_SITE 163-163

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIVQPIRSLEKIQEVKQYLLNKNKRDYFLFIFGINSALRISDILPLQVKDVQNKDHLWA
CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHCCCCHHHHCCCCCCCEEC
TESKTKKKRKILILESLKQEIYEYTKDMKENEYLFKSVRTRKPISRIQAYRILREAAAAC
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
GLEEIGTHTLRKTFGYHFYQRTKDIAELQRILNHSSPSITMRYIGIDEDTTRAAYKVFGG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCC
L
C
>Mature Secondary Structure
MHIVQPIRSLEKIQEVKQYLLNKNKRDYFLFIFGINSALRISDILPLQVKDVQNKDHLWA
CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHCCCCHHHHCCCCCCCEEC
TESKTKKKRKILILESLKQEIYEYTKDMKENEYLFKSVRTRKPISRIQAYRILREAAAAC
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
GLEEIGTHTLRKTFGYHFYQRTKDIAELQRILNHSSPSITMRYIGIDEDTTRAAYKVFGG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377