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The map label for this gene is yoeD

Identifier: 16078901

GI number: 16078901

Start: 2004262

End: 2004492

Strand: Reverse

Name: yoeD

Synonym: BSU18400

Alternate gene names: 16078901

Gene position: 2004492-2004262 (Counterclockwise)

Preceding gene: 16078903

Following gene: 255767432

Centisome position: 47.55

GC content: 37.23

Gene sequence:

>231_bases
ATGTATTTAACGATTGAAGAAACAGCAGAATATACAAATCTTTCAGAGGATTATATTAAAAGCTTGGTGCTCGAAGGGAA
AATCAGAGCCGTTCATGACGGGGAGCAATTTTTGATTTATAAGGAACAGTTCAAAACGCATCTCGAACAGCTGGAGAATT
ACAAAGCACTTGTGCAGGAAATATTAAATGAACCGATCCCGGAAGATATTGATGTAAAGGATGAGGATTAG

Upstream 100 bases:

>100_bases
ATATAGTGCATAATGCCGTTTTTCTGTGCAGAATTGATTATATTGATATGAGCCATGTGCTATATTAGAATCAGCATACG
GATTAAGAAGGGACTGCTAT

Downstream 100 bases:

>100_bases
GACACAATTTGAAATTGTGTCTTTTTTTGTATATTTTTGCGGAAGCTCCAGAAAATTGGGAGTGTCAGATTTCATTTTAA
GAGGTTTTTTGATGATTAGT

Product: excisionase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 76; Mature: 76

Protein sequence:

>76_residues
MYLTIEETAEYTNLSEDYIKSLVLEGKIRAVHDGEQFLIYKEQFKTHLEQLENYKALVQEILNEPIPEDIDVKDED

Sequences:

>Translated_76_residues
MYLTIEETAEYTNLSEDYIKSLVLEGKIRAVHDGEQFLIYKEQFKTHLEQLENYKALVQEILNEPIPEDIDVKDED
>Mature_76_residues
MYLTIEETAEYTNLSEDYIKSLVLEGKIRAVHDGEQFLIYKEQFKTHLEQLENYKALVQEILNEPIPEDIDVKDED

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOED_BACSU (O34555)

Other databases:

- EMBL:   AL009126
- PIR:   D69905
- RefSeq:   NP_389722.1
- ProteinModelPortal:   O34555
- SMR:   O34555
- EnsemblBacteria:   EBBACT00000001106
- GeneID:   939991
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU18400
- NMPDR:   fig|224308.1.peg.1844
- GenoList:   BSU18400
- GeneTree:   EBGT00050000002269
- HOGENOM:   HBG338057
- OMA:   MYITIEE
- ProtClustDB:   CLSK873446
- BioCyc:   BSUB:BSU18400-MONOMER
- InterPro:   IPR010093
- TIGRFAMs:   TIGR01764

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8990; Mature: 8990

Theoretical pI: Translated: 4.02; Mature: 4.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLTIEETAEYTNLSEDYIKSLVLEGKIRAVHDGEQFLIYKEQFKTHLEQLENYKALVQE
CEEECCCCHHHCCCCHHHHHHHHHCCCCEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHH
ILNEPIPEDIDVKDED
HHCCCCCCCCCCCCCC
>Mature Secondary Structure
MYLTIEETAEYTNLSEDYIKSLVLEGKIRAVHDGEQFLIYKEQFKTHLEQLENYKALVQE
CEEECCCCHHHCCCCHHHHHHHHHCCCCEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHH
ILNEPIPEDIDVKDED
HHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377