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The map label for this gene is ygaJ

Identifier: 255767201

GI number: 255767201

Start: 954893

End: 955585

Strand: Direct

Name: ygaJ

Synonym: BSU08780

Alternate gene names: 255767201

Gene position: 954893-955585 (Clockwise)

Preceding gene: 255767199

Following gene: 255767202

Centisome position: 22.65

GC content: 45.89

Gene sequence:

>693_bases
ATGAAGCAGATTATTGCGATGGGGGGCGGGGGTTTTTCGATGGAGCCGGATAATTTGTCCCTCGATCAATATATCCTCAA
TCAATCAAAACGAGAGCAGCCTCGTATTTGTTTTTTGCCGACGGCGAGCGGAGATTCCCAAAACTATATTCAGCGGTTTT
ATCATGCATTTCAAACATTGGATTGCGTGCCGTCTCATTTATCTTTGTTTAAGCCACCATCATCAGATTTAGTTTCTTTT
GTTATGGAAATGGACGTGATTTATGTTGGCGGGGGAAATACGCGGAATTTACTTGTGTTATGGAAAGAGTGGGGGCTGGA
CCATATTCTCAGGGAAGCATGGAAGAACGGTGTGGTTGTAGCTGGAATAAGTGCCGGTGCGATCTGCTGGTTTGAAGAAG
GGGTGACAGATTCAGCCGGACCGCTGACAAGTTTGAAAAGTTTAGGTTTTTTGCAAGGGAGCTTTTGTCCCCATTATGAC
GGGGAAAAGGATCGGAGACCGGCATACCACCAGCTGATATCTAACAAGTTCTTATGCAGTGGCTATGCAGCGGATGATGG
GGCTGCTCTCCATTTCATAAATGATCAGCTGTTTCAGACTGTGAGTTCAAGGTCGGGTGCAAAGGCATATCGGGTGATGA
TGGCTGAACATGAAATAGCTGAAATCCCGTTGCCGGTCAAATATTTAGGGTGA

Upstream 100 bases:

>100_bases
TGTTTTTTTAGCAGCTCCTGATAAGAAAGTATTTGACTTTGTTTCTTGCTTCTATACAAAATGCTATAATAAGCAACAAA
TTTTGTTGGGGGGTGTGATG

Downstream 100 bases:

>100_bases
AATTGGCTGAATATTATCTATATTCCTCTTTTTTTCAGATTGATTTTATGATAAGATGAGTGCGAAATCAATAGTTACTG
GGGGTGCCCGCTTTCGGGCT

Product: peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MKQIIAMGGGGFSMEPDNLSLDQYILNQSKREQPRICFLPTASGDSQNYIQRFYHAFQTLDCVPSHLSLFKPPSSDLVSF
VMEMDVIYVGGGNTRNLLVLWKEWGLDHILREAWKNGVVVAGISAGAICWFEEGVTDSAGPLTSLKSLGFLQGSFCPHYD
GEKDRRPAYHQLISNKFLCSGYAADDGAALHFINDQLFQTVSSRSGAKAYRVMMAEHEIAEIPLPVKYLG

Sequences:

>Translated_230_residues
MKQIIAMGGGGFSMEPDNLSLDQYILNQSKREQPRICFLPTASGDSQNYIQRFYHAFQTLDCVPSHLSLFKPPSSDLVSF
VMEMDVIYVGGGNTRNLLVLWKEWGLDHILREAWKNGVVVAGISAGAICWFEEGVTDSAGPLTSLKSLGFLQGSFCPHYD
GEKDRRPAYHQLISNKFLCSGYAADDGAALHFINDQLFQTVSSRSGAKAYRVMMAEHEIAEIPLPVKYLG
>Mature_230_residues
MKQIIAMGGGGFSMEPDNLSLDQYILNQSKREQPRICFLPTASGDSQNYIQRFYHAFQTLDCVPSHLSLFKPPSSDLVSF
VMEMDVIYVGGGNTRNLLVLWKEWGLDHILREAWKNGVVVAGISAGAICWFEEGVTDSAGPLTSLKSLGFLQGSFCPHYD
GEKDRRPAYHQLISNKFLCSGYAADDGAALHFINDQLFQTVSSRSGAKAYRVMMAEHEIAEIPLPVKYLG

Specific function: Unknown

COG id: COG3340

COG function: function code E; Peptidase E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S51 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YGAJ_BACSU (P71089)

Other databases:

- EMBL:   Z82044
- EMBL:   AL009126
- PIR:   E69816
- RefSeq:   NP_388758.2
- ProteinModelPortal:   P71089
- SMR:   P71089
- EnsemblBacteria:   EBBACT00000003945
- GeneID:   939241
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU08780
- NMPDR:   fig|224308.1.peg.877
- GenoList:   BSU08780
- GeneTree:   EBGT00050000000800
- HOGENOM:   HBG481679
- ProtClustDB:   CLSK2793849
- BioCyc:   BSUB:BSU08780-MONOMER
- GO:   GO:0006508
- InterPro:   IPR005320

Pfam domain/function: PF03575 Peptidase_S51

EC number: NA

Molecular weight: Translated: 25503; Mature: 25503

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: ACT_SITE 124-124 ACT_SITE 158-158

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQIIAMGGGGFSMEPDNLSLDQYILNQSKREQPRICFLPTASGDSQNYIQRFYHAFQTL
CCEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
DCVPSHLSLFKPPSSDLVSFVMEMDVIYVGGGNTRNLLVLWKEWGLDHILREAWKNGVVV
HHCHHHHHHCCCCHHHHHHHHHHHCEEEECCCCCCEEEEEEHHCCHHHHHHHHHHCCEEE
AGISAGAICWFEEGVTDSAGPLTSLKSLGFLQGSFCPHYDGEKDRRPAYHQLISNKFLCS
EECCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEE
GYAADDGAALHFINDQLFQTVSSRSGAKAYRVMMAEHEIAEIPLPVKYLG
CCCCCCCCEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEECC
>Mature Secondary Structure
MKQIIAMGGGGFSMEPDNLSLDQYILNQSKREQPRICFLPTASGDSQNYIQRFYHAFQTL
CCEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
DCVPSHLSLFKPPSSDLVSFVMEMDVIYVGGGNTRNLLVLWKEWGLDHILREAWKNGVVV
HHCHHHHHHCCCCHHHHHHHHHHHCEEEECCCCCCEEEEEEHHCCHHHHHHHHHHCCEEE
AGISAGAICWFEEGVTDSAGPLTSLKSLGFLQGSFCPHYDGEKDRRPAYHQLISNKFLCS
EECCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEE
GYAADDGAALHFINDQLFQTVSSRSGAKAYRVMMAEHEIAEIPLPVKYLG
CCCCCCCCEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202460; 9384377