Click here to switch to the map view.

The map label for this gene is ybbE

Identifier: 255767043

GI number: 255767043

Start: 188408

End: 189733

Strand: Reverse

Name: ybbE

Synonym: BSU01670

Alternate gene names: 255767043

Gene position: 189733-188408 (Counterclockwise)

Preceding gene: 255767044

Following gene: 16077234

Centisome position: 4.5

GC content: 44.87

Gene sequence:

>1326_bases
GTGAAAACAAAGACACTGTTCATATTCAGTGCCATTTTAACCCTATCGATATTTGCGCCAAATGAAACCTTCGCACAAAC
AGCAGGCAACTTGATTGAGCCGAAAATCATAAATGCAGAAACTGCACAATTCTCGACGAAGAAGCTAAGGAAGGTAGATC
AGATGATAGAACGGGATATTGCAGCAGGATTTCCAGGCGCCGTTCTTGTGGTGGTGAAGGATGGACGCATCATAAAAAAA
GCAGCATACGGCTACAGTAAAAAGTACGAAGGATCAGAACTGCTGCGCCGTCCGGCCAAAATGAAAACCCGCACGATGTT
TGACTTAGCCTCAAATACAAAAATGTACGCAACAAATTTTGCATTGCAGCGCTTAGTCAGCCAAGGAAAACTTGACGTCT
ATGAAAAAGTTTCTGCATATTTGCCGGGTTTCAAGGATCAGCCGGGTGACCTCATAAAAGGAAAAGACAAGATACGTGTC
ATTGATGTCCTCCAGCACCAATCAGGGCTCCCATCAAGCTTTTACTTTTACACGCCGGAAAAAGCCGGCAAGTACTATTC
CCAAGAACGGGACAAAACGATTGAATATTTGACGAAAATTCCGCTCGATTATCAAACCGGGACAAAACACGTATACAGTG
ACATTGGATATATGCTACTCGGATGTATTGTCGAAAAACTCACCGGCAAACCGCTTGATGTCTACACGGAGCAAGAGCTC
TACAAACCGCTCAGGCTGAAGCATACCTTGTACAATCCGCTGCAAAAGGGCTTTAAACCGAAACAGTTCGCAGCTACTGA
ACGCATGGGCAATACACGTGACGGCGTTATTCAATTCCCTAACATCCGCACAAACACGCTGCAAGGAGAGGTGCATGACG
AAAAAGCGTTTTACTCAATGGACGGCGTGTCTGGGCATGCCGGATTGTTCTCAAATGCAGATGATATGGCCATACTGCTG
CAAGTCATGTTAAACAAAGGTTCATACCGAAACATTTCTTTATTTGATCAGAAAACAGCCGACCTGTTTACAGCACCTTC
AGCAACAGATCCGACATTCGCTCTTGGCTGGAGGCGGAACGGAAGTAAAAGCATGGAATGGATGTTTGGCCCTCATGCCA
GCGAAAATGCTTACGGGCATACCGGCTGGACGGGGACAGTTACAATTATTGATCCAGCATACAATTTAGGCATCGCATTG
TTAACAAATAAAAAGCATACACCAGTTATTGATCCGGAAGAAAATCCGAACGTCTTTGAAGGTGACCAATTTCCAACAGG
CAGTTATGGAAGTGTCATAACCGCGATTTATGAAGCGATGGAGTGA

Upstream 100 bases:

>100_bases
ATGCATTCGGATATAAAGATGAAATGGCTTCTCAGTTCGATTAAATTGTTTCTGTTTTAGGGATAGTAAACGGGATAGAA
GCACAGAAAGGGGCTAGCCT

Downstream 100 bases:

>100_bases
ATGATTAGACGATAGGAGGAAGTTTCTATGAGACCTGTCTTTCCGCTTATCCTTTCAGCCGTTCTCTTTCTTTCATGCTT
TTTCGGGGCCAGACAGACAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MKTKTLFIFSAILTLSIFAPNETFAQTAGNLIEPKIINAETAQFSTKKLRKVDQMIERDIAAGFPGAVLVVVKDGRIIKK
AAYGYSKKYEGSELLRRPAKMKTRTMFDLASNTKMYATNFALQRLVSQGKLDVYEKVSAYLPGFKDQPGDLIKGKDKIRV
IDVLQHQSGLPSSFYFYTPEKAGKYYSQERDKTIEYLTKIPLDYQTGTKHVYSDIGYMLLGCIVEKLTGKPLDVYTEQEL
YKPLRLKHTLYNPLQKGFKPKQFAATERMGNTRDGVIQFPNIRTNTLQGEVHDEKAFYSMDGVSGHAGLFSNADDMAILL
QVMLNKGSYRNISLFDQKTADLFTAPSATDPTFALGWRRNGSKSMEWMFGPHASENAYGHTGWTGTVTIIDPAYNLGIAL
LTNKKHTPVIDPEENPNVFEGDQFPTGSYGSVITAIYEAME

Sequences:

>Translated_441_residues
MKTKTLFIFSAILTLSIFAPNETFAQTAGNLIEPKIINAETAQFSTKKLRKVDQMIERDIAAGFPGAVLVVVKDGRIIKK
AAYGYSKKYEGSELLRRPAKMKTRTMFDLASNTKMYATNFALQRLVSQGKLDVYEKVSAYLPGFKDQPGDLIKGKDKIRV
IDVLQHQSGLPSSFYFYTPEKAGKYYSQERDKTIEYLTKIPLDYQTGTKHVYSDIGYMLLGCIVEKLTGKPLDVYTEQEL
YKPLRLKHTLYNPLQKGFKPKQFAATERMGNTRDGVIQFPNIRTNTLQGEVHDEKAFYSMDGVSGHAGLFSNADDMAILL
QVMLNKGSYRNISLFDQKTADLFTAPSATDPTFALGWRRNGSKSMEWMFGPHASENAYGHTGWTGTVTIIDPAYNLGIAL
LTNKKHTPVIDPEENPNVFEGDQFPTGSYGSVITAIYEAME
>Mature_441_residues
MKTKTLFIFSAILTLSIFAPNETFAQTAGNLIEPKIINAETAQFSTKKLRKVDQMIERDIAAGFPGAVLVVVKDGRIIKK
AAYGYSKKYEGSELLRRPAKMKTRTMFDLASNTKMYATNFALQRLVSQGKLDVYEKVSAYLPGFKDQPGDLIKGKDKIRV
IDVLQHQSGLPSSFYFYTPEKAGKYYSQERDKTIEYLTKIPLDYQTGTKHVYSDIGYMLLGCIVEKLTGKPLDVYTEQEL
YKPLRLKHTLYNPLQKGFKPKQFAATERMGNTRDGVIQFPNIRTNTLQGEVHDEKAFYSMDGVSGHAGLFSNADDMAILL
QVMLNKGSYRNISLFDQKTADLFTAPSATDPTFALGWRRNGSKSMEWMFGPHASENAYGHTGWTGTVTIIDPAYNLGIAL
LTNKKHTPVIDPEENPNVFEGDQFPTGSYGSVITAIYEAME

Specific function: Unknown

COG id: COG1680

COG function: function code V; Beta-lactamase class C and other penicillin binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0214 family

Homologues:

Organism=Escherichia coli, GI87082101, Length=402, Percent_Identity=53.4825870646766, Blast_Score=477, Evalue=1e-136,
Organism=Caenorhabditis elegans, GI115533026, Length=391, Percent_Identity=23.7851662404092, Blast_Score=79, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YBBE_BACSU (O05213)

Other databases:

- EMBL:   AB002150
- EMBL:   AB002150
- EMBL:   AL009126
- PIR:   A69744
- RefSeq:   NP_388048.2
- ProteinModelPortal:   O05213
- SMR:   O05213
- EnsemblBacteria:   EBBACT00000000075
- GeneID:   938886
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU01670
- NMPDR:   fig|224308.1.peg.167
- GenoList:   BSU01670
- GeneTree:   EBGT00050000000083
- HOGENOM:   HBG734622
- ProtClustDB:   PRK03642
- BioCyc:   BSUB:BSU01670-MONOMER
- HAMAP:   MF_01034
- InterPro:   IPR012338
- InterPro:   IPR001466
- InterPro:   IPR022849

Pfam domain/function: PF00144 Beta-lactamase; SSF56601 PBP_transp_fold

EC number: NA

Molecular weight: Translated: 49423; Mature: 49423

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTKTLFIFSAILTLSIFAPNETFAQTAGNLIEPKIINAETAQFSTKKLRKVDQMIERDI
CCCHHHHHHHHHHHHEEECCCHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHH
AAGFPGAVLVVVKDGRIIKKAAYGYSKKYEGSELLRRPAKMKTRTMFDLASNTKMYATNF
HCCCCCEEEEEEECCCEEEHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCEEEHHHH
ALQRLVSQGKLDVYEKVSAYLPGFKDQPGDLIKGKDKIRVIDVLQHQSGLPSSFYFYTPE
HHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEHHHHCCCCCCCEEEECCH
KAGKYYSQERDKTIEYLTKIPLDYQTGTKHVYSDIGYMLLGCIVEKLTGKPLDVYTEQEL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHH
YKPLRLKHTLYNPLQKGFKPKQFAATERMGNTRDGVIQFPNIRTNTLQGEVHDEKAFYSM
HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCHHEEEE
DGVSGHAGLFSNADDMAILLQVMLNKGSYRNISLFDQKTADLFTAPSATDPTFALGWRRN
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHEECCCCCCCCEEEEECCC
GSKSMEWMFGPHASENAYGHTGWTGTVTIIDPAYNLGIALLTNKKHTPVIDPEENPNVFE
CCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCC
GDQFPTGSYGSVITAIYEAME
CCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKTKTLFIFSAILTLSIFAPNETFAQTAGNLIEPKIINAETAQFSTKKLRKVDQMIERDI
CCCHHHHHHHHHHHHEEECCCHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHH
AAGFPGAVLVVVKDGRIIKKAAYGYSKKYEGSELLRRPAKMKTRTMFDLASNTKMYATNF
HCCCCCEEEEEEECCCEEEHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCEEEHHHH
ALQRLVSQGKLDVYEKVSAYLPGFKDQPGDLIKGKDKIRVIDVLQHQSGLPSSFYFYTPE
HHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEHHHHCCCCCCCEEEECCH
KAGKYYSQERDKTIEYLTKIPLDYQTGTKHVYSDIGYMLLGCIVEKLTGKPLDVYTEQEL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHH
YKPLRLKHTLYNPLQKGFKPKQFAATERMGNTRDGVIQFPNIRTNTLQGEVHDEKAFYSM
HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCHHEEEE
DGVSGHAGLFSNADDMAILLQVMLNKGSYRNISLFDQKTADLFTAPSATDPTFALGWRRN
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHEECCCCCCCCEEEEECCC
GSKSMEWMFGPHASENAYGHTGWTGTVTIIDPAYNLGIALLTNKKHTPVIDPEENPNVFE
CCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCC
GDQFPTGSYGSVITAIYEAME
CCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377