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The map label for this gene is ybbD

Identifier: 16077234

GI number: 16077234

Start: 186452

End: 188380

Strand: Reverse

Name: ybbD

Synonym: BSU01660

Alternate gene names: 16077234

Gene position: 188380-186452 (Counterclockwise)

Preceding gene: 255767043

Following gene: 16077233

Centisome position: 4.47

GC content: 45.31

Gene sequence:

>1929_bases
ATGAGACCTGTCTTTCCGCTTATCCTTTCAGCCGTTCTCTTTCTTTCATGCTTTTTCGGGGCCAGACAGACAGAAGCCTC
TGCATCCAAACGTGCAATCGATGCCAATCAGATTGTCAATCGTATGTCGTTAGATGAAAAACTCGGCCAGATGCTGATGC
CTGATTTTAGAAATTGGCAAAAGGAAGGCGAGTCCTCTCCGCAAGCCCTTACAAAAATGAATGATGAAGTCGCCAGCCTC
GTCAAGAAATATCAATTCGGAGGCATCATCCTTTTTGCAGAAAATGTAAAAACAACAAAACAAACTGTCCAACTGACAGA
CGATTACCAAAAGGCAAGTCCAAAAATCCCGCTCATGCTGAGTATTGATCAGGAAGGCGGCATTGTAACGAGGTTAGGGG
AGGGCACTAATTTCCCAGGGAATATGGCGCTGGGCGCAGCCAGAAGCAGAATCAATGCGTATCAGACCGGCAGCATCATC
GGAAAAGAGCTCTCTGCCTTAGGCATCAATACAGATTTCAGCCCTGTCGTGGACATTAACAATAATCCTGATAATCCTGT
AATCGGCGTACGGTCATTCAGCTCCAATCGAGAACTGACATCACGCCTCGGTTTATATACGATGAAAGGGTTGCAGCGGC
AGGATATCGCGTCTGCCCTCAAACATTTCCCGGGACATGGAGACACGGACGTTGACAGCCATTATGGACTGCCGCTCGTT
TCCCATGGCCAAGAACGGCTTCGTGAGGTCGAGCTTTATCCTTTTCAAAAAGCAATTGATGCTGGTGCTGATATGGTGAT
GACAGCCCATGTTCAGTTTCCCGCCTTTGATGACACCACTTACAAAAGCAAACTCGATGGATCGGACATTCTGGTTCCAG
CTACACTTTCAAAAAAAGTGATGACAGGTCTTCTTCGTCAGGAAATGGGCTTTAATGGGGTCATCGTTACCGATGCGCTC
AATATGAAGGCAATCGCAGATCATTTCGGACAGGAAGAGGCTGTGGTCATGGCCGTAAAAGCTGGTGTCGATATTGCATT
AATGCCAGCCTCAGTCACTTCATTGAAAGAAGAACAGAAATTCGCACGTGTTATTCAAGCTTTGAAAGAAGCCGTGAAAA
ACGGGGATATTCCTGAACAACAAATCAACAATTCAGTTGAAAGAATCATTTCCCTGAAAATAAAACGCGGCATGTATCCA
GCGCGAAACAGCGACAGTACAAAAGAAAAAATAGCCAAAGCCAAAAAAATCGTAGGAAGCAAGCAGCACCTGAAAGCAGA
GAAAAAATTAGCTGAAAAAGCAGTAACTGTATTAAAAAATGAACAGCACACTTTGCCGTTCAAGCCTAAAAAAGGCAGCC
GAATCTTAATTGTGGCACCTTACGAAGAACAAACTGCTTCAATCGAACAAACCATTCACGATCTCATCAAGCGAAAGAAA
ATCAAACCCGTATCCCTCAGCAAAATGAACTTTGCCAGCCAAGTATTTAAGACCGAGCATGAAAAACAAGTAAAAGAGGC
TGATTATATCATTACCGGCTCCTATGTCGTCAAAAATGACCCTGTCGTCAACGACGGTGTCATCGACGACACAATATCAG
ATTCAAGCAAATGGGCCACCGTGTTTCCGAGAGCTGTCATGAAAGCCGCACTGCAGCACAACAAACCATTTGTCTTAATG
AGCCTGCGCAACCCCTATGACGCAGCCAATTTCGAAGAAGCAAAAGCACTGATTGCAGTCTATGGCTTTAAAGGATACGC
AAATGGCCGTTATCTTCAACCTAATATTCCGGCCGGAGTGATGGCGATATTCGGCCAGGCAAAACCTAAAGGCACACTTC
CAGTTGACATTCCGTCAGTCACGAAACCAGGGAACACCCTTTACCCACTTGGCTACGGATTAAATATCAAAACGGGAAGA
CCGCTTTAA

Upstream 100 bases:

>100_bases
CTTTGAAGGTGACCAATTTCCAACAGGCAGTTATGGAAGTGTCATAACCGCGATTTATGAAGCGATGGAGTGAATGATTA
GACGATAGGAGGAAGTTTCT

Downstream 100 bases:

>100_bases
TAAGGAGGGACACATGAGAAAAACAATATTCGCTTTTCTGACAGGGCTCATGATGTTCGGAACGATAACCGCTGCCTCTG
CTTCACCCGATTCAAAGAAT

Product: beta-hexosaminidase, lipoprotein

Products: NA

Alternate protein names: ORF1

Number of amino acids: Translated: 642; Mature: 642

Protein sequence:

>642_residues
MRPVFPLILSAVLFLSCFFGARQTEASASKRAIDANQIVNRMSLDEKLGQMLMPDFRNWQKEGESSPQALTKMNDEVASL
VKKYQFGGIILFAENVKTTKQTVQLTDDYQKASPKIPLMLSIDQEGGIVTRLGEGTNFPGNMALGAARSRINAYQTGSII
GKELSALGINTDFSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQRQDIASALKHFPGHGDTDVDSHYGLPLV
SHGQERLREVELYPFQKAIDAGADMVMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTDAL
NMKAIADHFGQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKRGMYP
ARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASIEQTIHDLIKRKK
IKPVSLSKMNFASQVFKTEHEKQVKEADYIITGSYVVKNDPVVNDGVIDDTISDSSKWATVFPRAVMKAALQHNKPFVLM
SLRNPYDAANFEEAKALIAVYGFKGYANGRYLQPNIPAGVMAIFGQAKPKGTLPVDIPSVTKPGNTLYPLGYGLNIKTGR
PL

Sequences:

>Translated_642_residues
MRPVFPLILSAVLFLSCFFGARQTEASASKRAIDANQIVNRMSLDEKLGQMLMPDFRNWQKEGESSPQALTKMNDEVASL
VKKYQFGGIILFAENVKTTKQTVQLTDDYQKASPKIPLMLSIDQEGGIVTRLGEGTNFPGNMALGAARSRINAYQTGSII
GKELSALGINTDFSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQRQDIASALKHFPGHGDTDVDSHYGLPLV
SHGQERLREVELYPFQKAIDAGADMVMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTDAL
NMKAIADHFGQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKRGMYP
ARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASIEQTIHDLIKRKK
IKPVSLSKMNFASQVFKTEHEKQVKEADYIITGSYVVKNDPVVNDGVIDDTISDSSKWATVFPRAVMKAALQHNKPFVLM
SLRNPYDAANFEEAKALIAVYGFKGYANGRYLQPNIPAGVMAIFGQAKPKGTLPVDIPSVTKPGNTLYPLGYGLNIKTGR
PL
>Mature_642_residues
MRPVFPLILSAVLFLSCFFGARQTEASASKRAIDANQIVNRMSLDEKLGQMLMPDFRNWQKEGESSPQALTKMNDEVASL
VKKYQFGGIILFAENVKTTKQTVQLTDDYQKASPKIPLMLSIDQEGGIVTRLGEGTNFPGNMALGAARSRINAYQTGSII
GKELSALGINTDFSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQRQDIASALKHFPGHGDTDVDSHYGLPLV
SHGQERLREVELYPFQKAIDAGADMVMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTDAL
NMKAIADHFGQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKRGMYP
ARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASIEQTIHDLIKRKK
IKPVSLSKMNFASQVFKTEHEKQVKEADYIITGSYVVKNDPVVNDGVIDDTISDSSKWATVFPRAVMKAALQHNKPFVLM
SLRNPYDAANFEEAKALIAVYGFKGYANGRYLQPNIPAGVMAIFGQAKPKGTLPVDIPSVTKPGNTLYPLGYGLNIKTGR
PL

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family

Homologues:

Organism=Escherichia coli, GI1787350, Length=268, Percent_Identity=29.4776119402985, Blast_Score=105, Evalue=7e-24,
Organism=Escherichia coli, GI1788453, Length=437, Percent_Identity=23.3409610983982, Blast_Score=103, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YBBD_BACSU (P40406)

Other databases:

- EMBL:   L19954
- EMBL:   AB002150
- EMBL:   AL009126
- PIR:   I39839
- RefSeq:   NP_388047.1
- PDB:   3BMX
- PDB:   3NVD
- PDBsum:   3BMX
- PDBsum:   3NVD
- ProteinModelPortal:   P40406
- SMR:   P40406
- EnsemblBacteria:   EBBACT00000001752
- GeneID:   938881
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU01660
- NMPDR:   fig|224308.1.peg.166
- GenoList:   BSU01660
- GeneTree:   EBGT00070000032379
- HOGENOM:   HBG617255
- OMA:   ILFSNNL
- PhylomeDB:   P40406
- ProtClustDB:   CLSK886588
- BioCyc:   BSUB:BSU01660-MONOMER
- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853
- Gene3D:   G3DSA:3.20.20.300

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C; SSF51445 Glyco_hydro_cat

EC number: 3.2.1.52

Molecular weight: Translated: 70581; Mature: 70581

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS00775 GLYCOSYL_HYDROL_F3; PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: ACT_SITE 318-318

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPVFPLILSAVLFLSCFFGARQTEASASKRAIDANQIVNRMSLDEKLGQMLMPDFRNWQ
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHH
KEGESSPQALTKMNDEVASLVKKYQFGGIILFAENVKTTKQTVQLTDDYQKASPKIPLML
HCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHEEECCCHHHCCCCCCEEE
SIDQEGGIVTRLGEGTNFPGNMALGAARSRINAYQTGSIIGKELSALGINTDFSPVVDIN
EECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHEECCCCCCCEEECC
NNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQRQDIASALKHFPGHGDTDVDSHYGLPLV
CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHH
SHGQERLREVELYPFQKAIDAGADMVMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKV
HCCHHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCCCCCCHHCCCCCCCEEEEHHHHHHH
MTGLLRQEMGFNGVIVTDALNMKAIADHFGQEEAVVMAVKAGVDIALMPASVTSLKEEQK
HHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCEEEEEEECCCCEEEECCHHHHHHHHHH
FARVIQALKEAVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTKEKIAKAKKIVGS
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
KQHLKAEKKLAEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASIEQTIHDLIKRKK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC
IKPVSLSKMNFASQVFKTEHEKQVKEADYIITGSYVVKNDPVVNDGVIDDTISDSSKWAT
CCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCEEEECCCCCCCCCCCCCCCCCCCHHH
VFPRAVMKAALQHNKPFVLMSLRNPYDAANFEEAKALIAVYGFKGYANGRYLQPNIPAGV
HHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHEEEEEECCCCCCCCEEECCCCCHHH
MAIFGQAKPKGTLPVDIPSVTKPGNTLYPLGYGLNIKTGRPL
HHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCEECCCCCCC
>Mature Secondary Structure
MRPVFPLILSAVLFLSCFFGARQTEASASKRAIDANQIVNRMSLDEKLGQMLMPDFRNWQ
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHH
KEGESSPQALTKMNDEVASLVKKYQFGGIILFAENVKTTKQTVQLTDDYQKASPKIPLML
HCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHEEECCCHHHCCCCCCEEE
SIDQEGGIVTRLGEGTNFPGNMALGAARSRINAYQTGSIIGKELSALGINTDFSPVVDIN
EECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHEECCCCCCCEEECC
NNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQRQDIASALKHFPGHGDTDVDSHYGLPLV
CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHH
SHGQERLREVELYPFQKAIDAGADMVMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKV
HCCHHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCCCCCCHHCCCCCCCEEEEHHHHHHH
MTGLLRQEMGFNGVIVTDALNMKAIADHFGQEEAVVMAVKAGVDIALMPASVTSLKEEQK
HHHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCEEEEEEECCCCEEEECCHHHHHHHHHH
FARVIQALKEAVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTKEKIAKAKKIVGS
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
KQHLKAEKKLAEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASIEQTIHDLIKRKK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC
IKPVSLSKMNFASQVFKTEHEKQVKEADYIITGSYVVKNDPVVNDGVIDDTISDSSKWAT
CCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCEEEECCCCCCCCCCCCCCCCCCCHHH
VFPRAVMKAALQHNKPFVLMSLRNPYDAANFEEAKALIAVYGFKGYANGRYLQPNIPAGV
HHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHEEEEEECCCCCCCCEEECCCCCHHH
MAIFGQAKPKGTLPVDIPSVTKPGNTLYPLGYGLNIKTGRPL
HHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377