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The map label for this gene is jag

Identifier: 16081155

GI number: 16081155

Start: 4213200

End: 4213826

Strand: Reverse

Name: jag

Synonym: BSU41030

Alternate gene names: 16081155

Gene position: 4213826-4213200 (Counterclockwise)

Preceding gene: 16081156

Following gene: 16081154

Centisome position: 99.96

GC content: 41.95

Gene sequence:

>627_bases
GTGAGGAATGTGACTGCTGCAGGGCGAAATGTCGATGAAGCAGTACAGTCCGGATTGCAAGAGTTGGGATTAACGAAGGA
TAAGGTAGAAATTACTGTTATTGAAGAGGGAAACAAAGGGTTTCTCGGTATTTTCGGTAAAAAGCCTGCGATCGTAAAGC
TGGTTGAAAAGATTGATCCGATTCAGCAAGCGAAGTTATATCTTCAAACGATTGCCGAAGCCATTGCCGGGAAGTCTGAT
GTGACTGTTCAAGAAAGCAAAAAGACAGTGAGATATCATATAACAGGTGAAAAGGCAGCATTGTTGATTGGGAAAAGAGG
ACAAACTTTAAACGCCCTTGAAACTTTGACACAGCTTGCCCTTAACCGTTATCCAGGCCAATATAAAAATGTGACGGTGG
ATGCAGAAAACTATCGTTTGAAAAGAAAAGAAACACTGAGCCAGCTGGCCATCAAGCTTGCTGACCAGGTTTTGAAAACG
AAAAAATCCATCCAGCTTGAGCCCATGCCGTCCAGCGAAAGAAAAATTATTCACGATACTCTTTCTGGATATGCAAACCA
CCAGATCAAAACATATTCAATGGGTGAAGGCGAAAATCGTCATCTCGTTATTTCCCATAAAAGATAG

Upstream 100 bases:

>100_bases
GGGTAGTTGGTAACTTGTTTATGATTGCGCAAACTTTCCTCATTAAAGGACCTGATATTAAAAAAAATCCTGAGCCGCAA
AAAGCCGGAGGAAAGAAAAA

Downstream 100 bases:

>100_bases
CATAAAACCGAAGTCCGATAAAAATTGGATTTCGGTTTTTTTGTATCCGAAAAATCTACTTTTCCTAGTAATATCAAGGT
TTTGCCGTTTAAGTTTTTTC

Product: SpoIIIJ-associated RNA/ssDNA-binding protein

Products: NA

Alternate protein names: SpoIIIJ-associated protein

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MRNVTAAGRNVDEAVQSGLQELGLTKDKVEITVIEEGNKGFLGIFGKKPAIVKLVEKIDPIQQAKLYLQTIAEAIAGKSD
VTVQESKKTVRYHITGEKAALLIGKRGQTLNALETLTQLALNRYPGQYKNVTVDAENYRLKRKETLSQLAIKLADQVLKT
KKSIQLEPMPSSERKIIHDTLSGYANHQIKTYSMGEGENRHLVISHKR

Sequences:

>Translated_208_residues
MRNVTAAGRNVDEAVQSGLQELGLTKDKVEITVIEEGNKGFLGIFGKKPAIVKLVEKIDPIQQAKLYLQTIAEAIAGKSD
VTVQESKKTVRYHITGEKAALLIGKRGQTLNALETLTQLALNRYPGQYKNVTVDAENYRLKRKETLSQLAIKLADQVLKT
KKSIQLEPMPSSERKIIHDTLSGYANHQIKTYSMGEGENRHLVISHKR
>Mature_208_residues
MRNVTAAGRNVDEAVQSGLQELGLTKDKVEITVIEEGNKGFLGIFGKKPAIVKLVEKIDPIQQAKLYLQTIAEAIAGKSD
VTVQESKKTVRYHITGEKAALLIGKRGQTLNALETLTQLALNRYPGQYKNVTVDAENYRLKRKETLSQLAIKLADQVLKT
KKSIQLEPMPSSERKIIHDTLSGYANHQIKTYSMGEGENRHLVISHKR

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): JAG_BACSU (Q01620)

Other databases:

- EMBL:   Z14225
- EMBL:   X62539
- EMBL:   D26185
- EMBL:   AL009126
- PIR:   I40438
- RefSeq:   NP_391983.1
- ProteinModelPortal:   Q01620
- SMR:   Q01620
- EnsemblBacteria:   EBBACT00000000238
- GeneID:   937933
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU41030
- NMPDR:   fig|224308.1.peg.4109
- GenoList:   BSU41030
- GeneTree:   EBGT00050000001509
- HOGENOM:   HBG697272
- OMA:   VNTYSEG
- ProtClustDB:   CLSK888218
- BioCyc:   BSUB:BSU41030-MONOMER
- InterPro:   IPR004087
- InterPro:   IPR015946
- InterPro:   IPR001374
- Gene3D:   G3DSA:3.30.300.20
- SMART:   SM00322
- SMART:   SM00393

Pfam domain/function: PF01424 R3H

EC number: NA

Molecular weight: Translated: 23162; Mature: 23162

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: PS50084 KH_TYPE_1; PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNVTAAGRNVDEAVQSGLQELGLTKDKVEITVIEEGNKGFLGIFGKKPAIVKLVEKIDP
CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEECCCCHHHHHHHHHHCH
IQQAKLYLQTIAEAIAGKSDVTVQESKKTVRYHITGEKAALLIGKRGQTLNALETLTQLA
HHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEEECCCEEEEEECCCCCHHHHHHHHHHH
LNRYPGQYKNVTVDAENYRLKRKETLSQLAIKLADQVLKTKKSIQLEPMPSSERKIIHDT
HHHCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCHHHHHHH
LSGYANHQIKTYSMGEGENRHLVISHKR
HHHHCCCCEEEEECCCCCCCEEEEEECC
>Mature Secondary Structure
MRNVTAAGRNVDEAVQSGLQELGLTKDKVEITVIEEGNKGFLGIFGKKPAIVKLVEKIDP
CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEECCCCHHHHHHHHHHCH
IQQAKLYLQTIAEAIAGKSDVTVQESKKTVRYHITGEKAALLIGKRGQTLNALETLTQLA
HHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEEECCCEEEEEECCCCCHHHHHHHHHHH
LNRYPGQYKNVTVDAENYRLKRKETLSQLAIKLADQVLKTKKSIQLEPMPSSERKIIHDT
HHHCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCHHHHHHH
LSGYANHQIKTYSMGEGENRHLVISHKR
HHHHCCCCEEEEECCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1487728; 1552862; 7584024; 9384377