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The map label for this gene is yydJ

Identifier: 16081066

GI number: 16081066

Start: 4124220

End: 4124942

Strand: Reverse

Name: yydJ

Synonym: BSU40140

Alternate gene names: 16081066

Gene position: 4124942-4124220 (Counterclockwise)

Preceding gene: 16081067

Following gene: 16081064

Centisome position: 97.85

GC content: 29.6

Gene sequence:

>723_bases
ATGAAATTAGAGTTTAAAAAGAGTATTAGCAACAAAGTTATCATTATTTTAGGAGCAATGTTTGTATTTTTATTTTTGCT
GGGTTATTTTTTACTTGTTGGAATCGATAAAGTCAGTAATGTTACACCTGAAATGTTTTTCTTTAGCTCCTATACTGTTG
CGACCCAGTTTGGTTTGATGTTATTTTCATTTGTTATAGCTTTCTTTATTAATAGAGAGTATTCAAACAAAAATATTCTC
TTTTACAAGTTAATTGGAGAGAACATCTATACTTTCTTTTATAAAAAGATAGCTGTTTTATTTTTAGAATGTTTTGCATT
TATAACGCTAGGCCTGCTAATCATATCGTTGATGTACCATGATTTTTCGCATTTTGCATTATTACTTTTTTTATTTTCTG
CAGTTATACTGCAGTATATTCTAATTATCGGAACTATAAGCGTGTTATGTCCTAATATATTAATTAGTATAGGTGTCAGT
ATCGTTTATTGGATGACTTCTGTTATCTTAGTAGCTATAAGCAATAAAACGTTTGGTTTCATTGCTCCTTTTGAGGCAGG
TAACACTATGTACCCCCGAATAGAAAGAGTGCTGCAATCTGATAACATGACACTTGGGAGTAATGATGTTTTATTTATTA
TTTTGTATTTAGTTTCAATTATTATCATAAATGCGATTGTCCTTCGCTTTTCTAAAACTAGATGGATCAAAATGGGCCTT
TAA

Upstream 100 bases:

>100_bases
ATTATTATATATTTAATCACCAAGAAATTCAACAATATCATTCAGTGGATAAATTAATTGAAGTGTATATAAATGAGTAA
TAAAACAGTGGGGGCTTGAG

Downstream 100 bases:

>100_bases
TAAAGGGAGCTACTTCACAATGAAGTAGCTTTTTATGTGCACCTATATATCATTAACATCAAGATTAATGCATGTGACTG
GCTGAGTTTGTTAAGGGAAG

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MKLEFKKSISNKVIIILGAMFVFLFLLGYFLLVGIDKVSNVTPEMFFFSSYTVATQFGLMLFSFVIAFFINREYSNKNIL
FYKLIGENIYTFFYKKIAVLFLECFAFITLGLLIISLMYHDFSHFALLLFLFSAVILQYILIIGTISVLCPNILISIGVS
IVYWMTSVILVAISNKTFGFIAPFEAGNTMYPRIERVLQSDNMTLGSNDVLFIILYLVSIIIINAIVLRFSKTRWIKMGL

Sequences:

>Translated_240_residues
MKLEFKKSISNKVIIILGAMFVFLFLLGYFLLVGIDKVSNVTPEMFFFSSYTVATQFGLMLFSFVIAFFINREYSNKNIL
FYKLIGENIYTFFYKKIAVLFLECFAFITLGLLIISLMYHDFSHFALLLFLFSAVILQYILIIGTISVLCPNILISIGVS
IVYWMTSVILVAISNKTFGFIAPFEAGNTMYPRIERVLQSDNMTLGSNDVLFIILYLVSIIIINAIVLRFSKTRWIKMGL
>Mature_240_residues
MKLEFKKSISNKVIIILGAMFVFLFLLGYFLLVGIDKVSNVTPEMFFFSSYTVATQFGLMLFSFVIAFFINREYSNKNIL
FYKLIGENIYTFFYKKIAVLFLECFAFITLGLLIISLMYHDFSHFALLLFLFSAVILQYILIIGTISVLCPNILISIGVS
IVYWMTSVILVAISNKTFGFIAPFEAGNTMYPRIERVLQSDNMTLGSNDVLFIILYLVSIIIINAIVLRFSKTRWIKMGL

Specific function: Suggested to be part of an ABC transporter complex yydIJ involved in export of the modified peptide yydF (Probable)

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YYDJ_BACSU (Q45592)

Other databases:

- EMBL:   D78193
- EMBL:   AL009126
- PIR:   H70091
- RefSeq:   NP_391894.1
- ProteinModelPortal:   Q45592
- EnsemblBacteria:   EBBACT00000002084
- GeneID:   937730
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU40140
- NMPDR:   fig|224308.1.peg.4020
- GenoList:   BSU40140
- GeneTree:   EBGT00050000005889
- HOGENOM:   HBG343305
- OMA:   STYTVFT
- ProtClustDB:   CLSK886045
- BioCyc:   BSUB:BSU40140-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27506; Mature: 27506

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1336cda8)-; HASH(0x130ad868)-; HASH(0x13883f04)-; HASH(0x13852284)-; HASH(0x11fbe1f0)-; HASH(0x1345ffa8)-;

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLEFKKSISNKVIIILGAMFVFLFLLGYFLLVGIDKVSNVTPEMFFFSSYTVATQFGLM
CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LFSFVIAFFINREYSNKNILFYKLIGENIYTFFYKKIAVLFLECFAFITLGLLIISLMYH
HHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DFSHFALLLFLFSAVILQYILIIGTISVLCPNILISIGVSIVYWMTSVILVAISNKTFGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
IAPFEAGNTMYPRIERVLQSDNMTLGSNDVLFIILYLVSIIIINAIVLRFSKTRWIKMGL
EEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCH
>Mature Secondary Structure
MKLEFKKSISNKVIIILGAMFVFLFLLGYFLLVGIDKVSNVTPEMFFFSSYTVATQFGLM
CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LFSFVIAFFINREYSNKNILFYKLIGENIYTFFYKKIAVLFLECFAFITLGLLIISLMYH
HHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DFSHFALLLFLFSAVILQYILIIGTISVLCPNILISIGVSIVYWMTSVILVAISNKTFGF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
IAPFEAGNTMYPRIERVLQSDNMTLGSNDVLFIILYLVSIIIINAIVLRFSKTRWIKMGL
EEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377