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The map label for this gene is yydI

Identifier: 16081067

GI number: 16081067

Start: 4124963

End: 4125592

Strand: Reverse

Name: yydI

Synonym: BSU40150

Alternate gene names: 16081067

Gene position: 4125592-4124963 (Counterclockwise)

Preceding gene: 255767867

Following gene: 16081066

Centisome position: 97.86

GC content: 29.84

Gene sequence:

>630_bases
ATGAATATAGCGAATTACACTTTAAAAGTGAAAGGCAAAACGTTACTTCAGGACACCGACTTGCATTTTTCGAGCGGGAA
AATTAATCACGTTGTCGGAAAAAATGGAGTCGGTAAATCACAGCTTGCTAAAGACTTTTTGTTGAATAATAGCAAAAGAA
TCGGCAGAGATATTCGTCAAAATGTTTCTTTAATATCCAGCTCGTCGAATATACCTAATGATGTTTCTAAGGACTTTTTA
TTACACTTTTTGAGTAAAAAATTTGATGCAAAAATGATAGATAAAATCGCATATTTACTTAATCTGGATAATATTGATGG
AAAAGTTCTGATCAAAAATTTGAGTGATGGACAAAAGCAAAAATTAAAATTGCTCAGTTTCTTATTAGAGGATAAAAATA
TTATTGTTTTAGATGAAATAACGAATTCATTAGACAAAAAAACGGTTATAGAGATTCATGGCTTCTTAAACAAGTATATT
CAGGAGAACCCCGAGAAGATTATCATCAACATTACACATGATTTGTCTGATTTAAAGGCGATAGAAGGGGATTATTATAT
ATTTAATCACCAAGAAATTCAACAATATCATTCAGTGGATAAATTAATTGAAGTGTATATAAATGAGTAA

Upstream 100 bases:

>100_bases
GATCGGAAACGAAAGAGGTACCTCAAAAGCTTAGACATTAGTAACAAATCACAAGGCAGAACATTTTATTATTATGCAAA
TATTTCCTAGGAGTATGTAT

Downstream 100 bases:

>100_bases
TAAAACAGTGGGGGCTTGAGATGAAATTAGAGTTTAAAAAGAGTATTAGCAACAAAGTTATCATTATTTTAGGAGCAATG
TTTGTATTTTTATTTTTGCT

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MNIANYTLKVKGKTLLQDTDLHFSSGKINHVVGKNGVGKSQLAKDFLLNNSKRIGRDIRQNVSLISSSSNIPNDVSKDFL
LHFLSKKFDAKMIDKIAYLLNLDNIDGKVLIKNLSDGQKQKLKLLSFLLEDKNIIVLDEITNSLDKKTVIEIHGFLNKYI
QENPEKIIINITHDLSDLKAIEGDYYIFNHQEIQQYHSVDKLIEVYINE

Sequences:

>Translated_209_residues
MNIANYTLKVKGKTLLQDTDLHFSSGKINHVVGKNGVGKSQLAKDFLLNNSKRIGRDIRQNVSLISSSSNIPNDVSKDFL
LHFLSKKFDAKMIDKIAYLLNLDNIDGKVLIKNLSDGQKQKLKLLSFLLEDKNIIVLDEITNSLDKKTVIEIHGFLNKYI
QENPEKIIINITHDLSDLKAIEGDYYIFNHQEIQQYHSVDKLIEVYINE
>Mature_209_residues
MNIANYTLKVKGKTLLQDTDLHFSSGKINHVVGKNGVGKSQLAKDFLLNNSKRIGRDIRQNVSLISSSSNIPNDVSKDFL
LHFLSKKFDAKMIDKIAYLLNLDNIDGKVLIKNLSDGQKQKLKLLSFLLEDKNIIVLDEITNSLDKKTVIEIHGFLNKYI
QENPEKIIINITHDLSDLKAIEGDYYIFNHQEIQQYHSVDKLIEVYINE

Specific function: Suggested to be part of an ABC transporter complex YydIJ involved in export of the modified peptide YydF (Probable). Responsible for energy coupling to the transport system

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YYDI_BACSU (Q45593)

Other databases:

- EMBL:   D78193
- EMBL:   AL009126
- PIR:   G70091
- RefSeq:   NP_391895.1
- ProteinModelPortal:   Q45593
- SMR:   Q45593
- EnsemblBacteria:   EBBACT00000003422
- GeneID:   937743
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU40150
- NMPDR:   fig|224308.1.peg.4021
- GenoList:   BSU40150
- GeneTree:   EBGT00050000000076
- HOGENOM:   HBG343306
- OMA:   LIINITH
- ProtClustDB:   CLSK886044
- BioCyc:   BSUB:BSU40150-MONOMER
- GO:   GO:0006810
- InterPro:   IPR003439
- InterPro:   IPR003593
- SMART:   SM00382

Pfam domain/function: PF00005 ABC_tran

EC number: NA

Molecular weight: Translated: 23883; Mature: 23883

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: PS00211 ABC_TRANSPORTER_1; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIANYTLKVKGKTLLQDTDLHFSSGKINHVVGKNGVGKSQLAKDFLLNNSKRIGRDIRQ
CCCCCEEEEECCCEEEEECCCEECCCCEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHH
NVSLISSSSNIPNDVSKDFLLHFLSKKFDAKMIDKIAYLLNLDNIDGKVLIKNLSDGQKQ
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHH
KLKLLSFLLEDKNIIVLDEITNSLDKKTVIEIHGFLNKYIQENPEKIIINITHDLSDLKA
HHHHHHHHHCCCCEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHH
IEGDYYIFNHQEIQQYHSVDKLIEVYINE
HCCCEEEECHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNIANYTLKVKGKTLLQDTDLHFSSGKINHVVGKNGVGKSQLAKDFLLNNSKRIGRDIRQ
CCCCCEEEEECCCEEEEECCCEECCCCEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHH
NVSLISSSSNIPNDVSKDFLLHFLSKKFDAKMIDKIAYLLNLDNIDGKVLIKNLSDGQKQ
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHH
KLKLLSFLLEDKNIIVLDEITNSLDKKTVIEIHGFLNKYIQENPEKIIINITHDLSDLKA
HHHHHHHHHCCCCEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHH
IEGDYYIFNHQEIQQYHSVDKLIEVYINE
HCCCEEEECHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377