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The map label for this gene is yxdJ

Identifier: 16081017

GI number: 16081017

Start: 4072284

End: 4072973

Strand: Reverse

Name: yxdJ

Synonym: BSU39660

Alternate gene names: 16081017

Gene position: 4072973-4072284 (Counterclockwise)

Preceding gene: 16081018

Following gene: 16081016

Centisome position: 96.62

GC content: 47.39

Gene sequence:

>690_bases
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGTGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Upstream 100 bases:

>100_bases
AGAAACCGCCGAGATGGCGGTTTTTTTGTGCGGTGTTGCGTCCATACGCCCAAAACGATTATGATGATGGCAGCAGTGTA
AGAAACGGGAGTGGTTCAGT

Downstream 100 bases:

>100_bases
AGCTGTTTCTCCGGTCTCATGCAGTGCTGATTCTGCTTTTTCTCCTTCAAGGGCTGTTTGTCTTCTTTTATTACTGGTTT
GCGGGTCTTCATTCTTTTTC

Product: two-component response regulator YxdK

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Sequences:

>Translated_229_residues
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS
>Mature_229_residues
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Specific function: Probable member of the two-component regulatory system yxdK/yxdJ. Positively regulates the expression of the yxdLMyxeA operon by direct interaction with its promoter region. Could also indirectly regulate the expression of the dlt operon

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain

Homologues:

Organism=Escherichia coli, GI1786599, Length=226, Percent_Identity=33.1858407079646, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1788394, Length=230, Percent_Identity=33.9130434782609, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1790860, Length=226, Percent_Identity=33.1858407079646, Blast_Score=121, Evalue=3e-29,
Organism=Escherichia coli, GI1789809, Length=225, Percent_Identity=33.3333333333333, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1786911, Length=226, Percent_Identity=31.4159292035398, Blast_Score=113, Evalue=9e-27,
Organism=Escherichia coli, GI1787375, Length=223, Percent_Identity=31.390134529148, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87082012, Length=225, Percent_Identity=27.1111111111111, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787229, Length=229, Percent_Identity=30.5676855895196, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI2367329, Length=236, Percent_Identity=30.9322033898305, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1790863, Length=227, Percent_Identity=27.7533039647577, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI145693140, Length=231, Percent_Identity=29.4372294372294, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786784, Length=224, Percent_Identity=28.5714285714286, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790552, Length=229, Percent_Identity=30.5676855895196, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1789402, Length=226, Percent_Identity=28.3185840707965, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788550, Length=107, Percent_Identity=34.5794392523364, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790299, Length=134, Percent_Identity=31.3432835820896, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI145693157, Length=106, Percent_Identity=33.9622641509434, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YXDJ_BACSU (P42421)

Other databases:

- EMBL:   D14399
- EMBL:   AL009126
- PIR:   G70073
- RefSeq:   NP_391845.1
- ProteinModelPortal:   P42421
- SMR:   P42421
- EnsemblBacteria:   EBBACT00000003588
- GeneID:   937599
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU39660
- NMPDR:   fig|224308.1.peg.3971
- GenoList:   BSU39660
- GeneTree:   EBGT00070000031831
- HOGENOM:   HBG753323
- OMA:   IMIVEDS
- ProtClustDB:   CLSK888172
- BioCyc:   BSUB:BSU39660-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00448
- SMART:   SM00862

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C; SSF52172 CheY_like

EC number: NA

Molecular weight: Translated: 26601; Mature: 26601

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDG
CCCEEEEECCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
YYWCRQIRQHSTSPIIFISARSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAY
HHHHHHHHHCCCCCEEEEEECCCCCCEEEEEECCCCHHHCCCCCHHHHHHHHHHHHHHHH
GEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKESKLLEVLLERGEKVTSRDRLM
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
EKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS
HHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECC
>Mature Secondary Structure
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDG
CCCEEEEECCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
YYWCRQIRQHSTSPIIFISARSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAY
HHHHHHHHHCCCCCEEEEEECCCCCCEEEEEECCCCHHHCCCCCHHHHHHHHHHHHHHHH
GEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKESKLLEVLLERGEKVTSRDRLM
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
EKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS
HHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7952181; 9384377