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The map label for this gene is yxeM

Identifier: 16081001

GI number: 16081001

Start: 4059488

End: 4060282

Strand: Reverse

Name: yxeM

Synonym: BSU39500

Alternate gene names: 16081001

Gene position: 4060282-4059488 (Counterclockwise)

Preceding gene: 255767842

Following gene: 16081000

Centisome position: 96.32

GC content: 43.9

Gene sequence:

>795_bases
ATGAAGATGAAAAAATGGACAGTGCTGGTCGTTGCTGCATTATTAGCGGTGCTCTCAGCTTGCGGCAATGGAAACAGCAG
CAGTAAAGAGGATGACAATGTGCTTCATGTCGGTGCGACAGGACAAAGTTACCCATTTGCTTATAAAGAAAACGGAAAGC
TGACAGGCTTTGACGTGGAAGTGATGGAAGCAGTCGCTAAGAAAATTGACATGAAACTGGACTGGAAGCTGCTTGAATTC
AGCGGGCTGATGGGAGAGCTTCAAACAGGCAAGCTTGACACCATTTCCAACCAGGTAGCTGTGACAGACGAACGTAAGGA
AACGTATAACTTTACGAAACCATACGCTTATGCGGGAACACAGATTGTCGTCAAAAAAGACAATACAGACATCAAATCAG
TAGACGATTTAAAAGGCAAGACAGTCGCAGCCGTTCTCGGTTCAAACCACGCGAAAAACCTTGAAAGCAAAGATCCTGAT
AAAAAAATCAATATCAAAACGTACGAAACACAAGAGGGTACGCTGAAGGATGTTGCGTACGGCCGTGTAGACGCTTATGT
CAACAGCCGAACTGTATTGATCGCGCAAATCAAGAAGACCGGTTTGCCATTAAAGCTTGCAGGAGATCCGATTGTTTACG
AACAGGTTGCATTCCCATTTGCCAAGGACGATGCGCACGACAAGCTCCGCAAAAAAGTCAATAAGGCCCTAGATGAATTG
CGTAAAGACGGAACACTGAAAAAACTCTCTGAAAAATACTTTAATGAAGATATCACAGTAGAACAGAAGCATTAA

Upstream 100 bases:

>100_bases
CCGCTCAGGTGAACAAGACCTTGGAAAAGGGCATATCACAGTCTATATGAAAAAACAATTGCGACATGATCTATAAAAAT
AGAAAAGGCGGGAAAATCAA

Downstream 100 bases:

>100_bases
GAAACGGCGGTGACTCACCAGAATGAACACGATTGATTGGGAATTCATGATATCAGCGTTCCCGACTTTAATTCAGGCCC
TTCCGATCACCTTGTTTATG

Product: ABC transporter binding lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MKMKKWTVLVVAALLAVLSACGNGNSSSKEDDNVLHVGATGQSYPFAYKENGKLTGFDVEVMEAVAKKIDMKLDWKLLEF
SGLMGELQTGKLDTISNQVAVTDERKETYNFTKPYAYAGTQIVVKKDNTDIKSVDDLKGKTVAAVLGSNHAKNLESKDPD
KKINIKTYETQEGTLKDVAYGRVDAYVNSRTVLIAQIKKTGLPLKLAGDPIVYEQVAFPFAKDDAHDKLRKKVNKALDEL
RKDGTLKKLSEKYFNEDITVEQKH

Sequences:

>Translated_264_residues
MKMKKWTVLVVAALLAVLSACGNGNSSSKEDDNVLHVGATGQSYPFAYKENGKLTGFDVEVMEAVAKKIDMKLDWKLLEF
SGLMGELQTGKLDTISNQVAVTDERKETYNFTKPYAYAGTQIVVKKDNTDIKSVDDLKGKTVAAVLGSNHAKNLESKDPD
KKINIKTYETQEGTLKDVAYGRVDAYVNSRTVLIAQIKKTGLPLKLAGDPIVYEQVAFPFAKDDAHDKLRKKVNKALDEL
RKDGTLKKLSEKYFNEDITVEQKH
>Mature_264_residues
MKMKKWTVLVVAALLAVLSACGNGNSSSKEDDNVLHVGATGQSYPFAYKENGKLTGFDVEVMEAVAKKIDMKLDWKLLEF
SGLMGELQTGKLDTISNQVAVTDERKETYNFTKPYAYAGTQIVVKKDNTDIKSVDDLKGKTVAAVLGSNHAKNLESKDPD
KKINIKTYETQEGTLKDVAYGRVDAYVNSRTVLIAQIKKTGLPLKLAGDPIVYEQVAFPFAKDDAHDKLRKKVNKALDEL
RKDGTLKKLSEKYFNEDITVEQKH

Specific function: Probably part of the ABC transporter complex yxeMNO that could be involved in amino-acid import. May transport S- methylcysteine

COG id: COG0834

COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family

Homologues:

Organism=Escherichia coli, GI1788228, Length=256, Percent_Identity=34.765625, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1787031, Length=233, Percent_Identity=34.7639484978541, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1788649, Length=252, Percent_Identity=26.5873015873016, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787085, Length=258, Percent_Identity=27.5193798449612, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1788648, Length=233, Percent_Identity=28.755364806867, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787088, Length=259, Percent_Identity=27.7992277992278, Blast_Score=85, Evalue=6e-18,

Paralogues:

None

Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): YXEM_BACSU (P54952)

Other databases:

- EMBL:   D45912
- EMBL:   AL009126
- PIR:   G70075
- RefSeq:   NP_391829.1
- ProteinModelPortal:   P54952
- SMR:   P54952
- EnsemblBacteria:   EBBACT00000003929
- GeneID:   937568
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU39500
- NMPDR:   fig|224308.1.peg.3955
- GenoList:   BSU39500
- GeneTree:   EBGT00070000032071
- HOGENOM:   HBG698334
- OMA:   HAKNLES
- PhylomeDB:   P54952
- ProtClustDB:   CLSK2752571
- BioCyc:   BSUB:BSU39500-MONOMER
- InterPro:   IPR015683
- InterPro:   IPR001638
- InterPro:   IPR018313
- PANTHER:   PTHR18966
- SMART:   SM00062

Pfam domain/function: PF00497 SBP_bac_3

EC number: NA

Molecular weight: Translated: 29311; Mature: 29311

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS01039 SBP_BACTERIAL_3; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMKKWTVLVVAALLAVLSACGNGNSSSKEDDNVLHVGATGQSYPFAYKENGKLTGFDVE
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCEEECCCCCEECCCHH
VMEAVAKKIDMKLDWKLLEFSGLMGELQTGKLDTISNQVAVTDERKETYNFTKPYAYAGT
HHHHHHHHCCCCCCEEEEEHHCCCCCCCCCCCCCCCCEEEEECCCHHHCCCCCCEEECCC
QIVVKKDNTDIKSVDDLKGKTVAAVLGSNHAKNLESKDPDKKINIKTYETQEGTLKDVAY
EEEEECCCCCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHH
GRVDAYVNSRTVLIAQIKKTGLPLKLAGDPIVYEQVAFPFAKDDAHDKLRKKVNKALDEL
HHHHEEECCCEEEEEEEHHCCCCEEECCCCEEEHHHHCCCCCCCHHHHHHHHHHHHHHHH
RKDGTLKKLSEKYFNEDITVEQKH
HCCCCHHHHHHHHCCCCCEEEECC
>Mature Secondary Structure
MKMKKWTVLVVAALLAVLSACGNGNSSSKEDDNVLHVGATGQSYPFAYKENGKLTGFDVE
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCEEECCCCCEECCCHH
VMEAVAKKIDMKLDWKLLEFSGLMGELQTGKLDTISNQVAVTDERKETYNFTKPYAYAGT
HHHHHHHHCCCCCCEEEEEHHCCCCCCCCCCCCCCCCEEEEECCCHHHCCCCCCEEECCC
QIVVKKDNTDIKSVDDLKGKTVAAVLGSNHAKNLESKDPDKKINIKTYETQEGTLKDVAY
EEEEECCCCCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHH
GRVDAYVNSRTVLIAQIKKTGLPLKLAGDPIVYEQVAFPFAKDDAHDKLRKKVNKALDEL
HHHHEEECCCEEEEEEEHHCCCCEEECCCCEEEHHHHCCCCCCCHHHHHHHHHHHHHHHH
RKDGTLKKLSEKYFNEDITVEQKH
HCCCCHHHHHHHHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8867804; 9384377