Click here to switch to the map view.

The map label for this gene is deoR

Identifier: 16080994

GI number: 16080994

Start: 4052379

End: 4053320

Strand: Reverse

Name: deoR

Synonym: BSU39430

Alternate gene names: 16080994

Gene position: 4053320-4052379 (Counterclockwise)

Preceding gene: 255767839

Following gene: 255767838

Centisome position: 96.15

GC content: 48.83

Gene sequence:

>942_bases
ATGGATCGGGAAAAACAGCAATTAAGCATAGAAGCGGCAAGGCTTTACTATCAGTCTGACTACAGTCAGCAGCAAATTGC
TGAGCAGCTCAACATTTCAAGGCCAACCGTTTCCCGGCTGCTGCAATATGCAAAGGAAAAAGGGTATGTCCAGATTCGCG
TCATGGACCCTTTTGAGGATTTGGATGCGCTCGGTTCCATACTTGAAGAGAAATACGGGCTCCTTGAGGCGCATGTTGTG
TTTTCCCCGACACCCGATTATGCAGGAATTACACATGACCTAAGCCGCTATGGTGCAGAATATATGCATGAAACGGTAAA
AGACGGCGACATTGTCGGCGTCAGCTGGGGAACCACCATGTATCAAATCGCGCAAAACATGCAGCCGAAGCAGGTAAAAG
GCGTCGAGGTCGTCCAGCTGAAAGGCGGCATCAGCCATTCCCGGGTAAACACGTATTCGGCTGAAACGATTCAGCTGTTT
GCAGAGGCTTTTCAAACGATGCCGCGCTATCTCCCGCTTCCCGTCGTGTTTGATAATGCGGATGTGAAGCGAATGGTGGA
GAAAGACCGTCATATTGAACGGATCATTGAGATGGGCAAGCAGGCGAATATCGCTCTCTTTACGGTCGGGACTGTCCGTG
ATGAAGCGCTGTTGTTTCGGCTCGGATATTTTAACGAAGAAGAGAAAGCCCTGCTGAAAAAACAGGCCGTCGGGGATATT
TGTTCACGCTTTTTTGATGCGAAAGGGAATATTTGCAGCAGCGCCATCAATGACCGGACCATCGGTGTTGAGCTTCAAGA
CCTTAGACTGAAGGAACGCTCCATTTTAGTTGCCGGCGGAAGCAGAAAAGTATCTTCCATTCACGGAGCATTAACCGGAA
AATATGCCAACGTTTTAATCATTGACCAGCATACCGCGAGGGCGCTTGTTAATGATTTGTGA

Upstream 100 bases:

>100_bases
AGTTTCTTAGAAATCAGGTGGATGAAAGCCGGCGCCAGCCTGTATAATAAAAGCAAATCAAAAGCAGTTTTATCAGGACT
GATCCACAGGGAGGTGCAGA

Downstream 100 bases:

>100_bases
CACGTTCAAACCTTTCATTGAACAAAATTTCAATTACCAATTTACATATGTTCAAAAGTCGGTTATGCTAAAAAATATCT
TAACAAAAAAGGAAGTGTGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MDREKQQLSIEAARLYYQSDYSQQQIAEQLNISRPTVSRLLQYAKEKGYVQIRVMDPFEDLDALGSILEEKYGLLEAHVV
FSPTPDYAGITHDLSRYGAEYMHETVKDGDIVGVSWGTTMYQIAQNMQPKQVKGVEVVQLKGGISHSRVNTYSAETIQLF
AEAFQTMPRYLPLPVVFDNADVKRMVEKDRHIERIIEMGKQANIALFTVGTVRDEALLFRLGYFNEEEKALLKKQAVGDI
CSRFFDAKGNICSSAINDRTIGVELQDLRLKERSILVAGGSRKVSSIHGALTGKYANVLIIDQHTARALVNDL

Sequences:

>Translated_313_residues
MDREKQQLSIEAARLYYQSDYSQQQIAEQLNISRPTVSRLLQYAKEKGYVQIRVMDPFEDLDALGSILEEKYGLLEAHVV
FSPTPDYAGITHDLSRYGAEYMHETVKDGDIVGVSWGTTMYQIAQNMQPKQVKGVEVVQLKGGISHSRVNTYSAETIQLF
AEAFQTMPRYLPLPVVFDNADVKRMVEKDRHIERIIEMGKQANIALFTVGTVRDEALLFRLGYFNEEEKALLKKQAVGDI
CSRFFDAKGNICSSAINDRTIGVELQDLRLKERSILVAGGSRKVSSIHGALTGKYANVLIIDQHTARALVNDL
>Mature_313_residues
MDREKQQLSIEAARLYYQSDYSQQQIAEQLNISRPTVSRLLQYAKEKGYVQIRVMDPFEDLDALGSILEEKYGLLEAHVV
FSPTPDYAGITHDLSRYGAEYMHETVKDGDIVGVSWGTTMYQIAQNMQPKQVKGVEVVQLKGGISHSRVNTYSAETIQLF
AEAFQTMPRYLPLPVVFDNADVKRMVEKDRHIERIIEMGKQANIALFTVGTVRDEALLFRLGYFNEEEKALLKKQAVGDI
CSRFFDAKGNICSSAINDRTIGVELQDLRLKERSILVAGGSRKVSSIHGALTGKYANVLIIDQHTARALVNDL

Specific function: Negative regulator of the dra-nupC-pdp operon. DeoR binds cooperatively to the operator DNA, which consists of a palindrome and a direct repeat sequence located 3' to the palindrome

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family

Homologues:

Organism=Escherichia coli, GI87082414, Length=330, Percent_Identity=32.1212121212121, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1787791, Length=315, Percent_Identity=26.984126984127, Blast_Score=116, Evalue=2e-27,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): DEOR_BACSU (P39140)

Other databases:

- EMBL:   X82174
- EMBL:   D45912
- EMBL:   AL009126
- PIR:   S78768
- RefSeq:   NP_391822.1
- ProteinModelPortal:   P39140
- SMR:   P39140
- EnsemblBacteria:   EBBACT00000002139
- GeneID:   937543
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU39430
- NMPDR:   fig|224308.1.peg.3948
- GenoList:   BSU39430
- GeneTree:   EBGT00050000002398
- HOGENOM:   HBG739213
- OMA:   ETIQLFA
- PhylomeDB:   P39140
- ProtClustDB:   CLSK888152
- BioCyc:   BSUB:BSU39430-MONOMER
- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind; SSF46689 Homeodomain_like

EC number: NA

Molecular weight: Translated: 35254; Mature: 35254

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDREKQQLSIEAARLYYQSDYSQQQIAEQLNISRPTVSRLLQYAKEKGYVQIRVMDPFED
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEEEECCHHH
LDALGSILEEKYGLLEAHVVFSPTPDYAGITHDLSRYGAEYMHETVKDGDIVGVSWGTTM
HHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHH
YQIAQNMQPKQVKGVEVVQLKGGISHSRVNTYSAETIQLFAEAFQTMPRYLPLPVVFDNA
HHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCHHHCCCCEEECCH
DVKRMVEKDRHIERIIEMGKQANIALFTVGTVRDEALLFRLGYFNEEEKALLKKQAVGDI
HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHEEECCCCCHHHHHHHHHHHHHH
CSRFFDAKGNICSSAINDRTIGVELQDLRLKERSILVAGGSRKVSSIHGALTGKYANVLI
HHHHHCCCCCHHHHHCCCCEECEEHHHCEECCCEEEEECCCCHHHHHHHHHCCCEEEEEE
IDQHTARALVNDL
EECHHHHHHHHCC
>Mature Secondary Structure
MDREKQQLSIEAARLYYQSDYSQQQIAEQLNISRPTVSRLLQYAKEKGYVQIRVMDPFED
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEEEECCHHH
LDALGSILEEKYGLLEAHVVFSPTPDYAGITHDLSRYGAEYMHETVKDGDIVGVSWGTTM
HHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHH
YQIAQNMQPKQVKGVEVVQLKGGISHSRVNTYSAETIQLFAEAFQTMPRYLPLPVVFDNA
HHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCHHHCCCCEEECCH
DVKRMVEKDRHIERIIEMGKQANIALFTVGTVRDEALLFRLGYFNEEEKALLKKQAVGDI
HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHEEECCCCCHHHHHHHHHHHHHH
CSRFFDAKGNICSSAINDRTIGVELQDLRLKERSILVAGGSRKVSSIHGALTGKYANVLI
HHHHHCCCCCHHHHHCCCCEECEEHHHCEECCCEEEEECCCCHHHHHHHHHCCCEEEEEE
IDQHTARALVNDL
EECHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8550462; 8867804; 9384377; 10074062; 10714997