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The map label for this gene is yxkD

Identifier: 16080935

GI number: 16080935

Start: 3987927

End: 3988763

Strand: Reverse

Name: yxkD

Synonym: BSU38840

Alternate gene names: 16080935

Gene position: 3988763-3987927 (Counterclockwise)

Preceding gene: 16080937

Following gene: 16080933

Centisome position: 94.62

GC content: 40.38

Gene sequence:

>837_bases
ATGAAAAAGAGAATGCTGGATGTACTTATGCTTGTGATTGGCGCTTTTTTCTTCGCGCTTGCGGTTAATTTATTTGCGAT
TCCCAATGATCTTGGGGAAGGCGGAGTCACTGGGATTACGCTGATTTTGTATTATCTGTTTCAATGGTCTCCTGGTGTCA
CGAACTTTATCTTAAATGCGTTTTTGCTTTTAATCGGCTACAAGTTTCTTGATGGAAAAACAACGGTTTATACGATCATT
GCGGTTGCGGCAAATTCGCTTTTTCTTCATCTGACACATGGGTGGAGCATTCCGTCTGATGAATTGATCATTAATACGAT
TTTCGCAGGTGTATTTGCCGGAGTCGGGATCGGCATGATTATCCGGGTCGGCGGGACGACGGCCGGTTCCGCGATTCTGG
CCAGAATTGCTAATAAATATTTAGACTGGAATATCAGCTATGCACTCTTGTTTTTTGATTTAATCGTAGTATTTAGCTCT
TATTTTATTATTGGTGCAGAAAAAATGATGTTTACGATCGTGATGCTGTATATCGGTACCAAAGTGATGGACTTCATTAT
TGAAGGTTTGAATACGAAAAAAGCCATTACGGTCATTTCAGAAAATAAGAGTGAGATTGCAGAGCAGGTAAATACCTTGA
TGGATCGGGGCGTGACGATTTTATCAGGGAAGGGAAATTATACGGGCCAGTCAAAAGAGATTTTGTATATCGTCATTAAC
AAACAGGAGCTGTCTATGCTGAAAAAAATCATTAGAAGCTGCGACAAAAAAGCGTTTGTGATCGTACATGACGTACGCGA
TGTGTTTGGCGAAGGGTTTGTGGATATATCTAAATAA

Upstream 100 bases:

>100_bases
CGGTGGGATAAAAGCCCAGGAGTTTCTGCTCTTTTTCGAGAGCGTTCTCCTGGGTTTTTTTATTTGCTAGAACAGAACAA
TGAAAAGGAGTGTTTTCGTG

Downstream 100 bases:

>100_bases
AGAAAAATCCCTCTGTACTTGAAACAGAGGGATTTTTTCATTTAGAACGGATATTTGCGGTATTGCTTCTGTATCGAAAT
CCATTTCGTCACGGTAAATT

Product: efflux transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MKKRMLDVLMLVIGAFFFALAVNLFAIPNDLGEGGVTGITLILYYLFQWSPGVTNFILNAFLLLIGYKFLDGKTTVYTII
AVAANSLFLHLTHGWSIPSDELIINTIFAGVFAGVGIGMIIRVGGTTAGSAILARIANKYLDWNISYALLFFDLIVVFSS
YFIIGAEKMMFTIVMLYIGTKVMDFIIEGLNTKKAITVISENKSEIAEQVNTLMDRGVTILSGKGNYTGQSKEILYIVIN
KQELSMLKKIIRSCDKKAFVIVHDVRDVFGEGFVDISK

Sequences:

>Translated_278_residues
MKKRMLDVLMLVIGAFFFALAVNLFAIPNDLGEGGVTGITLILYYLFQWSPGVTNFILNAFLLLIGYKFLDGKTTVYTII
AVAANSLFLHLTHGWSIPSDELIINTIFAGVFAGVGIGMIIRVGGTTAGSAILARIANKYLDWNISYALLFFDLIVVFSS
YFIIGAEKMMFTIVMLYIGTKVMDFIIEGLNTKKAITVISENKSEIAEQVNTLMDRGVTILSGKGNYTGQSKEILYIVIN
KQELSMLKKIIRSCDKKAFVIVHDVRDVFGEGFVDISK
>Mature_278_residues
MKKRMLDVLMLVIGAFFFALAVNLFAIPNDLGEGGVTGITLILYYLFQWSPGVTNFILNAFLLLIGYKFLDGKTTVYTII
AVAANSLFLHLTHGWSIPSDELIINTIFAGVFAGVGIGMIIRVGGTTAGSAILARIANKYLDWNISYALLFFDLIVVFSS
YFIIGAEKMMFTIVMLYIGTKVMDFIIEGLNTKKAITVISENKSEIAEQVNTLMDRGVTILSGKGNYTGQSKEILYIVIN
KQELSMLKKIIRSCDKKAFVIVHDVRDVFGEGFVDISK

Specific function: Unknown

COG id: COG1284

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0750 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YXKD_BACSU (P94357)

Other databases:

- EMBL:   D83026
- EMBL:   AL009126
- PIR:   G70080
- RefSeq:   NP_391763.1
- ProteinModelPortal:   P94357
- SMR:   P94357
- EnsemblBacteria:   EBBACT00000000946
- GeneID:   937425
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU38840
- NMPDR:   fig|224308.1.peg.3889
- GenoList:   BSU38840
- GeneTree:   EBGT00070000031915
- HOGENOM:   HBG475521
- OMA:   EILYIVI
- ProtClustDB:   CLSK888127
- BioCyc:   BSUB:BSU38840-MONOMER
- InterPro:   IPR003740
- InterPro:   IPR019264

Pfam domain/function: PF02588 DUF161; PF10035 DUF2179

EC number: NA

Molecular weight: Translated: 30733; Mature: 30733

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x133d6948)-; HASH(0x1232adb0)-; HASH(0x1269fc18)-; HASH(0x12df8148)-; HASH(0x12e1a524)-;

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRMLDVLMLVIGAFFFALAVNLFAIPNDLGEGGVTGITLILYYLFQWSPGVTNFILNA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
FLLLIGYKFLDGKTTVYTIIAVAANSLFLHLTHGWSIPSDELIINTIFAGVFAGVGIGMI
HHHHHHHHHCCCCHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEE
IRVGGTTAGSAILARIANKYLDWNISYALLFFDLIVVFSSYFIIGAEKMMFTIVMLYIGT
EEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVMDFIIEGLNTKKAITVISENKSEIAEQVNTLMDRGVTILSGKGNYTGQSKEILYIVIN
HHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEEC
KQELSMLKKIIRSCDKKAFVIVHDVRDVFGEGFVDISK
HHHHHHHHHHHHHCCCCEEEEEEHHHHHHCCCCEECCH
>Mature Secondary Structure
MKKRMLDVLMLVIGAFFFALAVNLFAIPNDLGEGGVTGITLILYYLFQWSPGVTNFILNA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
FLLLIGYKFLDGKTTVYTIIAVAANSLFLHLTHGWSIPSDELIINTIFAGVFAGVGIGMI
HHHHHHHHHCCCCHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEE
IRVGGTTAGSAILARIANKYLDWNISYALLFFDLIVVFSSYFIIGAEKMMFTIVMLYIGT
EEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVMDFIIEGLNTKKAITVISENKSEIAEQVNTLMDRGVTILSGKGNYTGQSKEILYIVIN
HHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEEC
KQELSMLKKIIRSCDKKAFVIVHDVRDVFGEGFVDISK
HHHHHHHHHHHHHCCCCEEEEEEHHHHHHCCCCEECCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377