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The map label for this gene is yxkH

Identifier: 16080931

GI number: 16080931

Start: 3983187

End: 3984026

Strand: Reverse

Name: yxkH

Synonym: BSU38800

Alternate gene names: 16080931

Gene position: 3984026-3983187 (Counterclockwise)

Preceding gene: 16080932

Following gene: 16080927

Centisome position: 94.51

GC content: 47.74

Gene sequence:

>840_bases
ATGAAACGATTGTTTTTAAGCATCTTTCTTTTGGGCAGCTGTTTGGCTCTTGCGGCTTGTGCTGATCAAGAGGCGAATGC
AGAGCAGCCGATGCCAAAAGCGGAACAAAAGAAACCGGAAAAAAAGGCAGTACAAGTTCAGAAAAAAGAAGACGATACAT
CCGCATGGATCAAAACAGAGAAACCGGCAAAGCTGCCGATTTTGATGTACCACAGCATTTCTTCAGGAAACAGCCTCCGT
GTGCCAAAGAAAGAATTCGAGGCGCATATGAAGTGGCTTCATGATAACGGCTATCAGACATTAACGCCGAAAGAGGCATC
TCTCATGCTGACGCAGGATAAAAAACCGAGTGAGAAGTGCGTGCTGATCACATTTGATGACGGGTACACCGACAATTATC
AAGATGCGTATCCGGTGCTGAAAAAGTACGGGATGAAGGCAACGATTTTTATGATCGGCAAATCGATCGGACATAAGCAC
CATCTGACAGAGGAACAAATGAAGGAAATGGCACAGCACGGCATATCGATTGAAAGCCATACGATTGACCACCTTGAGCT
GAACGGATTAACGCCTCAACAGCAGCAAAGTGAGATGGCTGATTCGAAAAAGCTGTTCGACAACATGTTTCATCAGCAAA
CCACCATCATCAGCTATCCGGTAGGGCGCTACAATGAGGAGACGCTGAAGGCCGCTGAAAAAACAGGCTATCAAATGGGC
GTGACGACAGAACCGGGCGCGGCTTCGAGAGACCAGGGAATGTATGCCCTCCATCGTGTGCGCGTGTCCCCAGGCATGTC
AGGCTCGGCTTTTGGTGCGTACATCGAATCAATGAAATAA

Upstream 100 bases:

>100_bases
AAAAACCGGACATGGAGACATGTCCGGTTTTTTGCTATTGAAAATCTCAGAATCAAACCGATGAAAAAGGAGGAAGAAAT
AGACAGAAAGCAGGAGAACG

Downstream 100 bases:

>100_bases
AAAAAGGCGGCGTTTAATCGCCGCCCCCTCCGCCGCCACAGCCGGAATCGCTGAAACCTCCGTCACTGCTGCATCCATCA
TGGTGTGAGCTATGATCTGA

Product: exported polysaccharide deacetylase, lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MKRLFLSIFLLGSCLALAACADQEANAEQPMPKAEQKKPEKKAVQVQKKEDDTSAWIKTEKPAKLPILMYHSISSGNSLR
VPKKEFEAHMKWLHDNGYQTLTPKEASLMLTQDKKPSEKCVLITFDDGYTDNYQDAYPVLKKYGMKATIFMIGKSIGHKH
HLTEEQMKEMAQHGISIESHTIDHLELNGLTPQQQQSEMADSKKLFDNMFHQQTTIISYPVGRYNEETLKAAEKTGYQMG
VTTEPGAASRDQGMYALHRVRVSPGMSGSAFGAYIESMK

Sequences:

>Translated_279_residues
MKRLFLSIFLLGSCLALAACADQEANAEQPMPKAEQKKPEKKAVQVQKKEDDTSAWIKTEKPAKLPILMYHSISSGNSLR
VPKKEFEAHMKWLHDNGYQTLTPKEASLMLTQDKKPSEKCVLITFDDGYTDNYQDAYPVLKKYGMKATIFMIGKSIGHKH
HLTEEQMKEMAQHGISIESHTIDHLELNGLTPQQQQSEMADSKKLFDNMFHQQTTIISYPVGRYNEETLKAAEKTGYQMG
VTTEPGAASRDQGMYALHRVRVSPGMSGSAFGAYIESMK
>Mature_279_residues
MKRLFLSIFLLGSCLALAACADQEANAEQPMPKAEQKKPEKKAVQVQKKEDDTSAWIKTEKPAKLPILMYHSISSGNSLR
VPKKEFEAHMKWLHDNGYQTLTPKEASLMLTQDKKPSEKCVLITFDDGYTDNYQDAYPVLKKYGMKATIFMIGKSIGHKH
HLTEEQMKEMAQHGISIESHTIDHLELNGLTPQQQQSEMADSKKLFDNMFHQQTTIISYPVGRYNEETLKAAEKTGYQMG
VTTEPGAASRDQGMYALHRVRVSPGMSGSAFGAYIESMK

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family

Homologues:

Organism=Escherichia coli, GI1786322, Length=212, Percent_Identity=29.7169811320755, Blast_Score=81, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YXKH_BACSU (P94361)

Other databases:

- EMBL:   D83026
- EMBL:   AL009126
- PIR:   A70081
- RefSeq:   NP_391759.1
- ProteinModelPortal:   P94361
- SMR:   P94361
- EnsemblBacteria:   EBBACT00000003282
- GeneID:   937411
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU38800
- NMPDR:   fig|224308.1.peg.3885
- GenoList:   BSU38800
- GeneTree:   EBGT00050000000552
- HOGENOM:   HBG728604
- OMA:   IAYPAGR
- ProtClustDB:   CLSK888125
- BioCyc:   BSUB:BSU38800-MONOMER
- InterPro:   IPR011330
- InterPro:   IPR002509
- Gene3D:   G3DSA:3.20.20.370

Pfam domain/function: PF01522 Polysacc_deac_1; SSF88713 Glyco_hydro/deAcase_b/a-brl

EC number: NA

Molecular weight: Translated: 31409; Mature: 31409

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLFLSIFLLGSCLALAACADQEANAEQPMPKAEQKKPEKKAVQVQKKEDDTSAWIKTE
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCHHHHHEECCCCCCCCCEEECC
KPAKLPILMYHSISSGNSLRVPKKEFEAHMKWLHDNGYQTLTPKEASLMLTQDKKPSEKC
CCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCCCCE
VLITFDDGYTDNYQDAYPVLKKYGMKATIFMIGKSIGHKHHLTEEQMKEMAQHGISIESH
EEEEECCCCCCCCHHHHHHHHHCCCEEEEEEEEHHHCCCCCCCHHHHHHHHHHCCCCCCC
TIDHLELNGLTPQQQQSEMADSKKLFDNMFHQQTTIISYPVGRYNEETLKAAEKTGYQMG
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHCCCEEC
VTTEPGAASRDQGMYALHRVRVSPGMSGSAFGAYIESMK
CCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHCCC
>Mature Secondary Structure
MKRLFLSIFLLGSCLALAACADQEANAEQPMPKAEQKKPEKKAVQVQKKEDDTSAWIKTE
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCHHHHHEECCCCCCCCCEEECC
KPAKLPILMYHSISSGNSLRVPKKEFEAHMKWLHDNGYQTLTPKEASLMLTQDKKPSEKC
CCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCCCCE
VLITFDDGYTDNYQDAYPVLKKYGMKATIFMIGKSIGHKHHLTEEQMKEMAQHGISIESH
EEEEECCCCCCCCHHHHHHHHHCCCEEEEEEEEHHHCCCCCCCHHHHHHHHHHCCCCCCC
TIDHLELNGLTPQQQQSEMADSKKLFDNMFHQQTTIISYPVGRYNEETLKAAEKTGYQMG
CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHCCCEEC
VTTEPGAASRDQGMYALHRVRVSPGMSGSAFGAYIESMK
CCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377