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The map label for this gene is cydA

Identifier: 16080927

GI number: 16080927

Start: 3977791

End: 3979197

Strand: Reverse

Name: cydA

Synonym: BSU38760

Alternate gene names: 16080927

Gene position: 3979197-3977791 (Counterclockwise)

Preceding gene: 16080931

Following gene: 16080926

Centisome position: 94.39

GC content: 45.06

Gene sequence:

>1407_bases
ATGAGTGAATTGGTATTAGCCCGCATACAATTTGCATCAACAACGTTGTTTCACTTCTTGTTTGTGCCGATGTCTATCGG
GCTTGTGTTTATGGTTGCGTTGATGGAGACTCTTTATCTTGTAAAGAAAAATGAGCTGTATCTCAAAATGGCAAAGTTTT
GGGGACACTTATTCTTAATAAATTTCGCAGTCGGTGTTGTAACGGGGATTTTGCAAGAATTCCAGTTTGGACTGAACTGG
TCAGATTACTCCCGTTTTGTCGGAGATGTATTTGGCGCTCCGCTTGCGATTGAAGCATTATTGGCGTTTTTCATGGAATC
TATTTTTATCGGATTATGGATTTTTGGCTGGGACCGCCTGCCGAAGAAAATTCACGCGCTCTGCATATGGCTCGTATCAT
TCGGAACGATCATGTCATCTTTCTGGATTTTAACAGCAAACTCCTTTATGCAGGAGCCGGTCGGCTTTACGATCAAAAAC
GGCCGCGCGGAAATGAATGATTTTGGCGCGTTGATTACAAACCCTCAGCTTTGGGTTGAATTCCCGCACGTTATTTTCGG
TGCGCTTGCCACTGGAGCTTTCTTTATTGCCGGAGTGAGTGCTTTTAAACTGCTGAAGAAAAAAGAAGTGCCGTTCTTTA
AGCAATCTTTTAAACTCGCAATGATCGTCGGTCTTTGTGCCGGTCTTGGCGTCGGCCTTAGCGGACACATGCAGGCTGAG
CACTTGATGGAATCACAGCCGATGAAAATGGCTGCCAGTGAAGGCCTATGGGAAGACAGCGGTGACCCTGCTGCTTGGAC
CGCTTTTGCGACGATCGATACAAAAAATGAAAAAAGCTCAAATGAAATCAAAGTTCCTTATGCCTTGAGCTACTTGGCTT
ATCAGAAATTCAGCGGAAGTGTCAAAGGGATGAAAACCCTTCAGGCTGAGTACGAAAAAATATACGGAAAAGGCGACTAC
ATTCCGCCAGTGAAAACGACATTCTGGAGCTTCCGCATCATGGTAGGAGCAGGTGTTGTCATGATTCTTGCTGCGTTAGG
CGGCCTTTGGTTAAACCGCCGTAAAAAGCTTGAAAACAGCAAATGGTATTTGCGCATCATGATCGCGTTGATTTCCTTCC
CGTTTCTTGCAAACTCCGCGGGCTGGATTATGACAGAAATCGGACGTCAGCCTTGGACGGTTATGGGGTTAATGACAACC
GCTCAATCTGTGTCGCCTAACGTAACAGCGGGTTCCTTGTTATTCTCAATCATCGCATTCGGTGTGATGTACATGATTCT
TGGTGCACTGCTTGTCTTCTTGTTTATCCGTGAGATTAAAAAAGGTGCGGAGCATGATAATCATCATGATGTGCCTGTAT
CAACAGATCCATTTAGTCAGGAGGTATACCATGGCATCTCTTCATGA

Upstream 100 bases:

>100_bases
ATTTTTTTCGTCTATTTTGTGAATTACTGATCAAAGTCTCGGTTCTATTTGTGAAGTAGTGAGCAAATTAACAGTTTTAA
CCGGAAATGGAGGAGAAAGC

Downstream 100 bases:

>100_bases
TCTTTGGTTTATACTCGTTGCTGTATTGTTTGTAGGATTCTTCTTTTTGGAAGGCTTTGATTTCGGGGTCGGCATGGCGA
CCCGTTTTCTTGGCCATAAT

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MSELVLARIQFASTTLFHFLFVPMSIGLVFMVALMETLYLVKKNELYLKMAKFWGHLFLINFAVGVVTGILQEFQFGLNW
SDYSRFVGDVFGAPLAIEALLAFFMESIFIGLWIFGWDRLPKKIHALCIWLVSFGTIMSSFWILTANSFMQEPVGFTIKN
GRAEMNDFGALITNPQLWVEFPHVIFGALATGAFFIAGVSAFKLLKKKEVPFFKQSFKLAMIVGLCAGLGVGLSGHMQAE
HLMESQPMKMAASEGLWEDSGDPAAWTAFATIDTKNEKSSNEIKVPYALSYLAYQKFSGSVKGMKTLQAEYEKIYGKGDY
IPPVKTTFWSFRIMVGAGVVMILAALGGLWLNRRKKLENSKWYLRIMIALISFPFLANSAGWIMTEIGRQPWTVMGLMTT
AQSVSPNVTAGSLLFSIIAFGVMYMILGALLVFLFIREIKKGAEHDNHHDVPVSTDPFSQEVYHGISS

Sequences:

>Translated_468_residues
MSELVLARIQFASTTLFHFLFVPMSIGLVFMVALMETLYLVKKNELYLKMAKFWGHLFLINFAVGVVTGILQEFQFGLNW
SDYSRFVGDVFGAPLAIEALLAFFMESIFIGLWIFGWDRLPKKIHALCIWLVSFGTIMSSFWILTANSFMQEPVGFTIKN
GRAEMNDFGALITNPQLWVEFPHVIFGALATGAFFIAGVSAFKLLKKKEVPFFKQSFKLAMIVGLCAGLGVGLSGHMQAE
HLMESQPMKMAASEGLWEDSGDPAAWTAFATIDTKNEKSSNEIKVPYALSYLAYQKFSGSVKGMKTLQAEYEKIYGKGDY
IPPVKTTFWSFRIMVGAGVVMILAALGGLWLNRRKKLENSKWYLRIMIALISFPFLANSAGWIMTEIGRQPWTVMGLMTT
AQSVSPNVTAGSLLFSIIAFGVMYMILGALLVFLFIREIKKGAEHDNHHDVPVSTDPFSQEVYHGISS
>Mature_467_residues
SELVLARIQFASTTLFHFLFVPMSIGLVFMVALMETLYLVKKNELYLKMAKFWGHLFLINFAVGVVTGILQEFQFGLNWS
DYSRFVGDVFGAPLAIEALLAFFMESIFIGLWIFGWDRLPKKIHALCIWLVSFGTIMSSFWILTANSFMQEPVGFTIKNG
RAEMNDFGALITNPQLWVEFPHVIFGALATGAFFIAGVSAFKLLKKKEVPFFKQSFKLAMIVGLCAGLGVGLSGHMQAEH
LMESQPMKMAASEGLWEDSGDPAAWTAFATIDTKNEKSSNEIKVPYALSYLAYQKFSGSVKGMKTLQAEYEKIYGKGDYI
PPVKTTFWSFRIMVGAGVVMILAALGGLWLNRRKKLENSKWYLRIMIALISFPFLANSAGWIMTEIGRQPWTVMGLMTTA
QSVSPNVTAGSLLFSIIAFGVMYMILGALLVFLFIREIKKGAEHDNHHDVPVSTDPFSQEVYHGISS

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family

Homologues:

Organism=Escherichia coli, GI87081779, Length=505, Percent_Identity=37.029702970297, Blast_Score=322, Evalue=3e-89,
Organism=Escherichia coli, GI1787212, Length=487, Percent_Identity=38.8090349075975, Blast_Score=315, Evalue=5e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CYDA_BACSU (P94364)

Other databases:

- EMBL:   D83026
- EMBL:   AL009126
- PIR:   A69611
- RefSeq:   NP_391755.1
- EnsemblBacteria:   EBBACT00000003382
- GeneID:   937406
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU38760
- NMPDR:   fig|224308.1.peg.3881
- GenoList:   BSU38760
- GeneTree:   EBGT00050000002512
- HOGENOM:   HBG753185
- OMA:   ANIAGWV
- PhylomeDB:   P94364
- ProtClustDB:   CLSK2460967
- BioCyc:   BSUB:BSU38760-MONOMER
- GO:   GO:0006810
- InterPro:   IPR002585

Pfam domain/function: PF01654 Bac_Ubq_Cox

EC number: 1.10.3.-

Molecular weight: Translated: 52293; Mature: 52162

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS00268 CECROPIN

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x134bfa9c)-; HASH(0x133068bc)-; HASH(0x1293ff18)-; HASH(0x13339b20)-; HASH(0x129c8f84)-; HASH(0x134fbb1c)-; HASH(0x13461414)-; HASH(0x12d8be64)-; HASH(0x11d9f700)-;

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSELVLARIQFASTTLFHFLFVPMSIGLVFMVALMETLYLVKKNELYLKMAKFWGHLFLI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
NFAVGVVTGILQEFQFGLNWSDYSRFVGDVFGAPLAIEALLAFFMESIFIGLWIFGWDRL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
PKKIHALCIWLVSFGTIMSSFWILTANSFMQEPVGFTIKNGRAEMNDFGALITNPQLWVE
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEECCCCCHHHCCHHCCCCHHEEE
FPHVIFGALATGAFFIAGVSAFKLLKKKEVPFFKQSFKLAMIVGLCAGLGVGLSGHMQAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
HLMESQPMKMAASEGLWEDSGDPAAWTAFATIDTKNEKSSNEIKVPYALSYLAYQKFSGS
HHHHCCCHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCEECHHHHHHHHHHHHCCC
VKGMKTLQAEYEKIYGKGDYIPPVKTTFWSFRIMVGAGVVMILAALGGLWLNRRKKLENS
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KWYLRIMIALISFPFLANSAGWIMTEIGRQPWTVMGLMTTAQSVSPNVTAGSLLFSIIAF
HHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
GVMYMILGALLVFLFIREIKKGAEHDNHHDVPVSTDPFSQEVYHGISS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCH
>Mature Secondary Structure 
SELVLARIQFASTTLFHFLFVPMSIGLVFMVALMETLYLVKKNELYLKMAKFWGHLFLI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
NFAVGVVTGILQEFQFGLNWSDYSRFVGDVFGAPLAIEALLAFFMESIFIGLWIFGWDRL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
PKKIHALCIWLVSFGTIMSSFWILTANSFMQEPVGFTIKNGRAEMNDFGALITNPQLWVE
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEECCCCCHHHCCHHCCCCHHEEE
FPHVIFGALATGAFFIAGVSAFKLLKKKEVPFFKQSFKLAMIVGLCAGLGVGLSGHMQAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
HLMESQPMKMAASEGLWEDSGDPAAWTAFATIDTKNEKSSNEIKVPYALSYLAYQKFSGS
HHHHCCCHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCEECHHHHHHHHHHHHCCC
VKGMKTLQAEYEKIYGKGDYIPPVKTTFWSFRIMVGAGVVMILAALGGLWLNRRKKLENS
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KWYLRIMIALISFPFLANSAGWIMTEIGRQPWTVMGLMTTAQSVSPNVTAGSLLFSIIAF
HHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
GVMYMILGALLVFLFIREIKKGAEHDNHHDVPVSTDPFSQEVYHGISS
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377