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The map label for this gene is yxlC

Identifier: 16080920

GI number: 16080920

Start: 3969999

End: 3970319

Strand: Reverse

Name: yxlC

Synonym: BSU38690

Alternate gene names: 16080920

Gene position: 3970319-3969999 (Counterclockwise)

Preceding gene: 16080921

Following gene: 16080919

Centisome position: 94.18

GC content: 40.81

Gene sequence:

>321_bases
ATGAATAAAGAAAAGCTTTCTGATCATTTAAAGTCAGAATGGAAAAAAATTGATCAAACAGCCAATCCCTCTATACCGAA
TCAAAAAGAACTGCTTCACCAGCTGTCACAAATGAAAGCTGAATACAGAAAAAAACTTCTTCAAGAGATCATTTTATTTG
TATTCTGCGCGCTGATGGTTGTGAGTGCTGCAATCTTAGCTTTCACTCAAGCTCCTGCTGTGTTTATTGTGCTTCAGGTT
TGTGTGCTTGCGGTGCTGCCGATTTTGATTGCGGCTGAGAAAAAAAGGCATCTCGGCGAATGCGAGGTGAAACGCGGATG
A

Upstream 100 bases:

>100_bases
TATACCTACGCTGAAATCGGGGTGATGCTTCAAATCAAAGAAGGCACTGTAAAGTCCAGAGTTCATAAAGGGCTCCAGCA
AATCAGAAAGGAGTGGGATG

Downstream 100 bases:

>100_bases
CACAAACAGAAATTATCATAACGGTTGCGGCTTGTCTCATCGTATTGGCGCAGGGAATCTTTTTATTTATTGATGCGAAA
AAACGTAATCACATGGCATG

Product: sigma-Y antisigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 106

Protein sequence:

>106_residues
MNKEKLSDHLKSEWKKIDQTANPSIPNQKELLHQLSQMKAEYRKKLLQEIILFVFCALMVVSAAILAFTQAPAVFIVLQV
CVLAVLPILIAAEKKRHLGECEVKRG

Sequences:

>Translated_106_residues
MNKEKLSDHLKSEWKKIDQTANPSIPNQKELLHQLSQMKAEYRKKLLQEIILFVFCALMVVSAAILAFTQAPAVFIVLQV
CVLAVLPILIAAEKKRHLGECEVKRG
>Mature_106_residues
MNKEKLSDHLKSEWKKIDQTANPSIPNQKELLHQLSQMKAEYRKKLLQEIILFVFCALMVVSAAILAFTQAPAVFIVLQV
CVLAVLPILIAAEKKRHLGECEVKRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YXLC_BACSU (P94371)

Other databases:

- EMBL:   D83026
- EMBL:   AL009126
- PIR:   F70081
- RefSeq:   NP_391748.1
- IntAct:   P94371
- EnsemblBacteria:   EBBACT00000003134
- GeneID:   938082
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU38690
- NMPDR:   fig|224308.1.peg.3874
- GenoList:   BSU38690
- GeneTree:   EBGT00050000006324
- OMA:   NERDEKE
- ProtClustDB:   CLSK888119
- BioCyc:   BSUB:BSU38690-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11997; Mature: 11997

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x137ce890)-; HASH(0x12e0f6b0)-;

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKEKLSDHLKSEWKKIDQTANPSIPNQKELLHQLSQMKAEYRKKLLQEIILFVFCALMV
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSAAILAFTQAPAVFIVLQVCVLAVLPILIAAEKKRHLGECEVKRG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
>Mature Secondary Structure
MNKEKLSDHLKSEWKKIDQTANPSIPNQKELLHQLSQMKAEYRKKLLQEIILFVFCALMV
CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSAAILAFTQAPAVFIVLQVCVLAVLPILIAAEKKRHLGECEVKRG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377